MitoAge

Haemorhous mexicanus

House finch

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Maximum lifespan
11.6 yr
AnAge record
mtDNA size
16,822 bp
RefSeq NC_025610.1
GC content
45.23%
Whole genome
Non-coding
1,339 bp
D-loop 1,244 bp

Where House finch sits among 2,335 species

Whole-genome GC content against maximum lifespan. House finch has the 1,463rd longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %House finch
  • This species
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Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,822 bp
GC skew (G − C) / (G + C)
−0.373
AT skew (A − T) / (A + T)
+0.146

Life history

Maximum lifespan
11.6 years
Adult weight
21.4 g
Basal metabolic rate
0.311 W
Female sexual maturity
363 days
Gestation or incubation
14 days
Litter or clutch size
4
Litters per year
3

Lifespan from AnAge · AnAge record · other traits from AnAge build 15 (HAGRID 00895)

About this record

Lifespan source
AnAge build 15
Based on
an animal in the wild
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
New in build 2
In the database since
build 2 (2026-11-13)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,822 bp
Protein-coding11,378 bp
12S rRNA973 bp
16S rRNA1,600 bp
All tRNA1,541 bp
D-loop1,244 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1978 bp28.3%26.3%14.3%31.1%45.40%−0.369+0.037
ND2NADH dehydrogenase subunit 21,040 bp30.5%24.8%10.3%34.4%44.71%−0.540+0.103
COX1Cytochrome c oxidase subunit I1,551 bp29.1%24.3%16.2%30.3%46.52%−0.304+0.090
COX2Cytochrome c oxidase subunit II684 bp31.0%22.5%14.9%31.6%46.49%−0.358+0.158
ATP8ATP synthase F0 subunit 8168 bp31.0%24.4%7.1%37.5%44.64%−0.680+0.118
ATP6ATP synthase F0 subunit 6684 bp31.4%23.8%9.8%34.9%44.74%−0.562+0.138
COX3Cytochrome c oxidase subunit III784 bp27.9%23.6%15.8%32.7%48.47%−0.347+0.084
ND3NADH dehydrogenase subunit 3351 bp30.5%25.6%11.1%32.8%43.88%−0.494+0.086
ND4LNADH dehydrogenase subunit 4L297 bp27.9%23.6%11.8%36.7%48.49%−0.514+0.085
ND4NADH dehydrogenase subunit 41,378 bp31.3%21.9%11.0%35.8%46.81%−0.532+0.176
ND5NADH dehydrogenase subunit 51,818 bp32.2%22.7%11.6%33.6%45.16%−0.486+0.174
ND6NADH dehydrogenase subunit 6519 bp40.8%11.6%9.6%38.0%47.59%−0.595+0.559
CYTBCytochrome b1,143 bp29.5%23.2%13.4%33.9%47.33%−0.434+0.120
12S rRNA12S ribosomal RNA973 bp30.8%20.9%21.2%27.1%48.30%−0.123+0.193
16S rRNA16S ribosomal RNA1,600 bp34.9%21.9%19.8%23.4%43.19%−0.085+0.228
D-loopControl region (D-loop)1,244 bp30.6%27.0%12.9%29.4%42.36%−0.389+0.063

Codon usage

Counts per codon, darker is more frequent

3,796 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F5.8%
UUU32
UUC187
Leu L17.3%
UUA63
UUG19
CUU57
CUC124
CUA346
CUG46
Ile I7.9%
AUU76
AUC225
Met M4.4%
AUA132
AUG36
Val V5.2%
GUU35
GUC49
GUA88
GUG26
Ser S7.7%
UCU36
UCC100
UCA90
UCG9
AGU6
AGC51
Pro P5.8%
CCU27
CCC73
CCA114
CCG5
Thr T8.3%
ACU47
ACC134
ACA125
ACG8
Ala A8.0%
GCU45
GCC153
GCA98
GCG7
Tyr Y2.9%
UAU17
UAC93
His H2.7%
CAU16
CAC88
Gln Q2.5%
CAA88
CAG6
Asn N3.7%
AAU16
AAC123
Lys K2.2%
AAA82
AAG3
Asp D1.7%
GAU6
GAC58
Glu E2.5%
GAA81
GAG13
Cys C0.7%
UGU4
UGC24
Trp W2.8%
UGA98
UGG8
Arg R1.9%
CGU6
CGC10
CGA52
CGG4
Gly G5.8%
GGU29
GGC47
GGA117
GGG28
Stop 0.3%
UAA6
UAG1
AGA2
AGG1

Genome map

38 annotated features in NC_025610.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (45.2%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
D-loopControl region11,2441,244 bp–42.4%
tRNA-PheTransfer RNA1,2451,31268 bp+–
12S rRNARibosomal RNA1,3132,285973 bp+48.3%
tRNA-ValTransfer RNA2,2862,35570 bp+–
16S rRNARibosomal RNA2,3563,9551,600 bp+43.2%
tRNA-Leu (UUR)Transfer RNA3,9564,03075 bp+–
ND1Protein-coding gene4,0445,021978 bp+45.4%
tRNA-IleTransfer RNA5,0275,10074 bp+–
tRNA-GlnTransfer RNA5,1045,17471 bp−–
tRNA-MetTransfer RNA5,1745,24269 bp+–
ND2Protein-coding gene5,2436,2821,040 bp+44.7%
tRNA-TrpTransfer RNA6,2836,35270 bp+–
tRNA-AlaTransfer RNA6,3546,42269 bp−–
tRNA-AsnTransfer RNA6,4316,50373 bp−–
tRNA-CysTransfer RNA6,5046,57067 bp−–
tRNA-TyrTransfer RNA6,5706,64071 bp−–
COX1Protein-coding gene6,6428,1921,551 bp+46.5%
tRNA-Ser (UCN)Transfer RNA8,1848,25673 bp−–
tRNA-AspTransfer RNA8,2608,32869 bp+–
COX2Protein-coding gene8,3359,018684 bp+46.5%
tRNA-LysTransfer RNA9,0209,08869 bp+–
ATP8Protein-coding gene9,0909,257168 bp+44.6%
ATP6Protein-coding gene9,2489,931684 bp+44.7%
COX3Protein-coding gene9,94010,723784 bp+48.5%
tRNA-GlyTransfer RNA10,72410,79269 bp+–
ND3Protein-coding gene10,79311,143351 bp+43.9%
tRNA-ArgTransfer RNA11,14511,21470 bp+–
ND4LProtein-coding gene11,21611,512297 bp+48.5%
ND4Protein-coding gene11,50612,8831,378 bp+46.8%
tRNA-HisTransfer RNA12,88412,95370 bp+–
tRNA-Ser (AGY)Transfer RNA12,95413,01966 bp+–
tRNA-Leu (CUN)Transfer RNA13,01913,08971 bp+–
ND5Protein-coding gene13,09014,9071,818 bp+45.2%
CYTBProtein-coding gene14,91616,0581,143 bp+47.3%
tRNA-ThrTransfer RNA16,06216,13069 bp+–
tRNA-ProTransfer RNA16,14916,21870 bp−–
ND6Protein-coding gene16,23116,749519 bp−47.6%
tRNA-GluTransfer RNA16,75216,82271 bp−–

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