Hemidactylium scutatum

Four-toed salamander

Maximum lifespan

8.9 yr

AnAge record

mtDNA size

17,421 bp

RefSeq NC_006342.1

GC content

36.51%

Whole genome

Non-coding

2,188 bp

D-loop 931 bp

Where Four-toed salamander sits among 2,335 species

Whole-genome GC content against maximum lifespan. Four-toed salamander has the 1,694th longest lifespan of them.

This species
Other amphibians
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome17,421 bp

GC skew (G − C) / (G + C): −0.192
AT skew (A − T) / (A + T): +0.070

Life history

Maximum lifespan: 8.9 years
Female sexual maturity: 2.5 years
Male sexual maturity: 2.5 years
Litter or clutch size: 30

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 00169)

About this record

Lifespan source: AnAge build 15
Based on: an animal in captivity
Data quality: acceptable, small sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Unchanged since build 1
In the database since: build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome17,421 bp

Protein-coding11,321 bp

12S rRNA892 bp

16S rRNA1,521 bp

All tRNA1,510 bp

D-loop931 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Hemidactylium scutatum genes

ND1NADH dehydrogenase subunit 1	969 bp	33.5%	31.3%	13.5%	21.7%	35.19%	−0.232	+0.035
ND2NADH dehydrogenase subunit 2	1,041 bp	36.0%	28.8%	10.5%	24.7%	35.16%	−0.404	+0.111
COX1Cytochrome c oxidase subunit I	1,548 bp	27.8%	31.6%	18.0%	22.6%	40.63%	−0.113	−0.064
COX2Cytochrome c oxidase subunit II	688 bp	33.4%	29.2%	15.6%	21.8%	37.36%	−0.167	+0.067
ATP8ATP synthase F0 subunit 8	162 bp	42.6%	23.5%	9.9%	24.1%	33.95%	−0.418	+0.290
ATP6ATP synthase F0 subunit 6	681 bp	32.3%	34.5%	11.2%	22.0%	33.19%	−0.327	−0.033
COX3Cytochrome c oxidase subunit III	784 bp	28.7%	31.9%	17.3%	22.1%	39.41%	−0.120	−0.053
ND3NADH dehydrogenase subunit 3	343 bp	28.6%	33.5%	14.9%	23.0%	37.90%	−0.215	−0.080
ND4LNADH dehydrogenase subunit 4L	297 bp	33.7%	32.0%	12.5%	21.5%	34.12%	−0.267	+0.026
ND4NADH dehydrogenase subunit 4	1,366 bp	32.9%	32.7%	11.9%	22.5%	34.41%	−0.311	+0.002
ND5NADH dehydrogenase subunit 5	1,804 bp	34.9%	30.7%	11.6%	22.7%	34.37%	−0.323	+0.064
ND6NADH dehydrogenase subunit 6	516 bp	46.1%	20.2%	10.9%	22.9%	33.72%	−0.356	+0.392
CYTBCytochrome b	1,141 bp	30.2%	32.7%	13.0%	24.1%	37.07%	−0.300	−0.039
12S rRNA12S ribosomal RNA	892 bp	37.3%	22.1%	18.3%	22.3%	40.58%	−0.099	+0.257
16S rRNA16S ribosomal RNA	1,521 bp	39.7%	24.7%	17.1%	18.5%	35.57%	−0.039	+0.233
D-loopControl region (D-loop)	931 bp	33.0%	38.5%	12.5%	16.1%	28.57%	−0.128	−0.077

Codon usage

Counts per codon, darker is more frequent

Gene

3,777 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.2%

UUU167

UUC66

Leu L15.4%

UUA222

UUG24

CUU118

CUC35

CUA155

CUG28

Ile I8.3%

AUU248

AUC64

Met M6.9%

AUA217

AUG44

Val V5.0%

GUU48

GUC21

GUA94

GUG24

Ser S7.5%

UCU63

UCC28

UCA132

UCG11

AGU14

AGC35

Pro P5.1%

CCU40

CCC10

CCA119

CCG24

Thr T8.2%

ACU68

ACC76

ACA156

ACG11

Ala A7.0%

GCU57

GCC98

GCA102

GCG9

Tyr Y2.9%

UAU68

UAC42

His H2.5%

CAU33

CAC61

Gln Q2.5%

CAA85

CAG9

Asn N4.3%

AAU84

AAC77

Lys K2.4%

AAA81

AAG9

Asp D1.7%

GAU27

GAC36

Glu E2.7%

GAA80

GAG21

Cys C0.8%

UGU14

UGC18

Trp W2.9%

UGA98

UGG11

Arg R1.8%

CGU8

CGC9

CGA49

CGG3

Gly G5.8%

GGU29

GGC55

GGA100

GGG35

Stop 0.2%

UAA4

UAG1

AGA2

AGG0

Genome map

38 annotated features in NC_006342.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (36.5%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Hemidactylium scutatum (NC_006342.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	65	65 bp	+	–
12S rRNA	Ribosomal RNA	66	957	892 bp	+	40.6%
tRNA-Val	Transfer RNA	958	1,025	68 bp	+	–
16S rRNA	Ribosomal RNA	1,026	2,546	1,521 bp	+	35.6%
tRNA-Leu (UUR)	Transfer RNA	2,547	2,621	75 bp	+	–
ND1	Protein-coding gene	2,622	3,590	969 bp	+	35.2%
tRNA-Ile	Transfer RNA	3,590	3,658	69 bp	+	–
tRNA-Gln	Transfer RNA	3,662	3,732	71 bp	−	–
tRNA-Met	Transfer RNA	3,732	3,799	68 bp	+	–
ND2	Protein-coding gene	3,800	4,840	1,041 bp	+	35.2%
tRNA-Trp	Transfer RNA	4,839	4,907	69 bp	+	–
tRNA-Ala	Transfer RNA	4,911	4,979	69 bp	−	–
tRNA-Asn	Transfer RNA	4,981	5,050	70 bp	−	–
tRNA-Cys	Transfer RNA	5,085	5,148	64 bp	−	–
tRNA-Tyr	Transfer RNA	5,148	5,215	68 bp	−	–
COX1	Protein-coding gene	5,217	6,764	1,548 bp	+	40.6%
tRNA-Ser (UCN)	Transfer RNA	6,760	6,829	70 bp	−	–
tRNA-Asp	Transfer RNA	6,829	6,895	67 bp	+	–
COX2	Protein-coding gene	6,896	7,583	688 bp	+	37.4%
tRNA-Lys	Transfer RNA	7,584	7,653	70 bp	+	–
ATP8	Protein-coding gene	7,655	7,816	162 bp	+	34.0%
ATP6	Protein-coding gene	7,807	8,487	681 bp	+	33.2%
COX3	Protein-coding gene	8,487	9,270	784 bp	+	39.4%
tRNA-Gly	Transfer RNA	9,270	9,337	68 bp	+	–
ND3	Protein-coding gene	9,337	9,679	343 bp	+	37.9%
tRNA-Arg	Transfer RNA	9,681	9,746	66 bp	+	–
ND4L	Protein-coding gene	9,748	10,044	297 bp	+	34.1%
ND4	Protein-coding gene	10,038	11,403	1,366 bp	+	34.4%
tRNA-His	Transfer RNA	11,404	11,472	69 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,473	11,536	64 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,537	11,608	72 bp	+	–
ND5	Protein-coding gene	11,609	13,412	1,804 bp	+	34.4%
ND6	Protein-coding gene	13,412	13,927	516 bp	−	33.7%
tRNA-Glu	Transfer RNA	13,927	13,996	70 bp	−	–
CYTB	Protein-coding gene	13,997	15,137	1,141 bp	+	37.1%
tRNA-Thr	Transfer RNA	15,138	15,208	71 bp	+	–
tRNA-Pro	Transfer RNA	16,421	16,490	70 bp	−	–
D-loop	Control region	16,491	17,421	931 bp	–	28.6%