MitoAge

Himatione sanguinea

Apapane

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Maximum lifespan
11 yr
AnAge record
mtDNA size
16,840 bp
RefSeq NC_025602.1
GC content
45.71%
Whole genome
Non-coding
1,348 bp
D-loop 1,252 bp

Where Apapane sits among 2,335 species

Whole-genome GC content against maximum lifespan. Apapane has the 1,497th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Apapane
  • This species
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Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,840 bp
GC skew (G − C) / (G + C)
−0.364
AT skew (A − T) / (A + T)
+0.110

Life history

Maximum lifespan
11 years
Adult weight
13.4 g
Birth weight
3 g
Basal metabolic rate
0.3 W
Gestation or incubation
13 days
Litter or clutch size
3
Litters per year
1

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 00899)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, small sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Updated in build 2
In the database since
build 1 (2015-07-01)
Last changed
build 2 (2026-11-13)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,840 bp
Protein-coding11,388 bp
12S rRNA972 bp
16S rRNA1,599 bp
All tRNA1,542 bp
D-loop1,252 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1987 bp26.4%28.0%14.4%31.1%45.54%−0.367−0.028
ND2NADH dehydrogenase subunit 21,040 bp29.5%25.9%10.9%33.8%44.62%−0.513+0.066
COX1Cytochrome c oxidase subunit I1,551 bp27.1%25.3%17.1%30.3%47.45%−0.279+0.034
COX2Cytochrome c oxidase subunit II685 bp30.5%22.6%15.3%31.4%46.78%−0.344+0.148
ATP8ATP synthase F0 subunit 8168 bp28.0%26.2%8.9%36.9%45.83%−0.610+0.033
ATP6ATP synthase F0 subunit 6684 bp30.0%24.6%10.5%34.9%45.47%−0.537+0.099
COX3Cytochrome c oxidase subunit III784 bp26.4%24.4%16.1%33.2%49.24%−0.347+0.040
ND3NADH dehydrogenase subunit 3351 bp29.1%27.6%12.0%31.3%43.31%−0.447+0.025
ND4LNADH dehydrogenase subunit 4L297 bp25.3%24.6%14.1%36.0%50.17%−0.436+0.014
ND4NADH dehydrogenase subunit 41,378 bp30.5%22.6%11.0%35.8%46.88%−0.529+0.148
ND5NADH dehydrogenase subunit 51,818 bp31.0%23.3%11.4%34.3%45.71%−0.499+0.141
ND6NADH dehydrogenase subunit 6519 bp39.5%12.3%9.2%38.9%48.17%−0.616+0.524
CYTBCytochrome b1,143 bp27.9%24.1%13.7%34.2%47.99%−0.427+0.074
12S rRNA12S ribosomal RNA972 bp30.6%21.4%21.4%26.6%48.05%−0.109+0.176
16S rRNA16S ribosomal RNA1,599 bp34.4%21.9%19.8%24.0%43.72%−0.096+0.222
D-loopControl region (D-loop)1,252 bp28.7%28.5%13.6%28.9%42.63%−0.361+0.003

Codon usage

Counts per codon, darker is more frequent

3,796 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F5.7%
UUU36
UUC182
Leu L17.6%
UUA57
UUG21
CUU71
CUC146
CUA324
CUG49
Ile I7.7%
AUU88
AUC204
Met M4.2%
AUA113
AUG46
Val V5.3%
GUU37
GUC61
GUA75
GUG29
Ser S7.9%
UCU44
UCC99
UCA88
UCG8
AGU7
AGC53
Pro P5.8%
CCU41
CCC83
CCA89
CCG6
Thr T8.2%
ACU61
ACC123
ACA118
ACG8
Ala A8.0%
GCU49
GCC140
GCA105
GCG10
Tyr Y2.9%
UAU22
UAC87
His H2.7%
CAU20
CAC82
Gln Q2.5%
CAA86
CAG9
Asn N3.6%
AAU27
AAC108
Lys K2.3%
AAA82
AAG4
Asp D1.7%
GAU9
GAC57
Glu E2.4%
GAA77
GAG13
Cys C0.7%
UGU6
UGC22
Trp W2.8%
UGA100
UGG7
Arg R1.9%
CGU10
CGC12
CGA43
CGG7
Gly G6.0%
GGU25
GGC64
GGA99
GGG38
Stop 0.2%
UAA5
UAG1
AGA2
AGG1

Genome map

38 annotated features in NC_025602.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (45.7%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
D-loopControl region11,2521,252 bp–42.6%
tRNA-PheTransfer RNA1,2531,32068 bp+–
12S rRNARibosomal RNA1,3212,292972 bp+48.1%
tRNA-ValTransfer RNA2,2932,36270 bp+–
16S rRNARibosomal RNA2,3633,9611,599 bp+43.7%
tRNA-Leu (UUR)Transfer RNA3,9624,03675 bp+–
ND1Protein-coding gene4,0515,037987 bp+45.5%
tRNA-IleTransfer RNA5,0435,11674 bp+–
tRNA-GlnTransfer RNA5,1205,19071 bp−–
tRNA-MetTransfer RNA5,1905,25869 bp+–
ND2Protein-coding gene5,2596,2981,040 bp+44.6%
tRNA-TrpTransfer RNA6,2996,36971 bp+–
tRNA-AlaTransfer RNA6,3716,43969 bp−–
tRNA-AsnTransfer RNA6,4486,52073 bp−–
tRNA-CysTransfer RNA6,5216,58767 bp−–
tRNA-TyrTransfer RNA6,5876,65771 bp−–
COX1Protein-coding gene6,6598,2091,551 bp+47.5%
tRNA-Ser (UCN)Transfer RNA8,2018,27373 bp−–
tRNA-AspTransfer RNA8,2778,34569 bp+–
COX2Protein-coding gene8,3569,040685 bp+46.8%
tRNA-LysTransfer RNA9,0419,10969 bp+–
ATP8Protein-coding gene9,1119,278168 bp+45.8%
ATP6Protein-coding gene9,2699,952684 bp+45.5%
COX3Protein-coding gene9,96110,744784 bp+49.2%
tRNA-GlyTransfer RNA10,74510,81369 bp+–
ND3Protein-coding gene10,81411,164351 bp+43.3%
tRNA-ArgTransfer RNA11,16611,23570 bp+–
ND4LProtein-coding gene11,23711,533297 bp+50.2%
ND4Protein-coding gene11,52712,9041,378 bp+46.9%
tRNA-HisTransfer RNA12,90512,97470 bp+–
tRNA-Ser (AGY)Transfer RNA12,97513,04066 bp+–
tRNA-Leu (CUN)Transfer RNA13,04013,11071 bp+–
ND5Protein-coding gene13,11114,9281,818 bp+45.7%
CYTBProtein-coding gene14,93516,0771,143 bp+48.0%
tRNA-ThrTransfer RNA16,08116,14969 bp+–
tRNA-ProTransfer RNA16,17116,24070 bp−–
ND6Protein-coding gene16,25016,768519 bp−48.2%
tRNA-GluTransfer RNA16,77016,84071 bp−–

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