Hydropotes inermis
Chinese water deer
GC content
36.10%
Whole genome
Non-coding
987 bp
D-loop 926 bp
Where Chinese water deer sits among 2,335 species
Whole-genome GC content against maximum lifespan. Chinese water deer has the 1,315th longest lifespan of them.
- This species
- Other mammals
- Other classes
Base composition
Whole genome16,355 bp
- GC skew (G − C) / (G + C)
- −0.262
- AT skew (A − T) / (A + T)
- +0.045
Life history
- Maximum lifespan
- 13.9 years
- Adult weight
- 11.5 kg
- Birth weight
- 1 kg
- Body temperature
- 38.3 °C
- Female sexual maturity
- 183 days
- Gestation or incubation
- 190 days
- Litter or clutch size
- 2.7
Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 02027)
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in captivity
- Data quality
- acceptable, large sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- Unchanged since build 1
- In the database since
- build 1 (2015-07-01)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,355 bp
Protein-coding11,339 bp
12S rRNA957 bp
16S rRNA1,567 bp
All tRNA1,508 bp
D-loop926 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 956 bp | 35.77% | −0.333 | −0.016 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,043 bp | 32.79% | −0.456 | +0.090 | |||||
| COX1Cytochrome c oxidase subunit I | 1,545 bp | 35.99% | −0.126 | −0.094 | |||||
| COX2Cytochrome c oxidase subunit II | 684 bp | 33.77% | −0.212 | +0.068 | |||||
| ATP8ATP synthase F0 subunit 8 | 201 bp | 29.35% | −0.492 | +0.141 | |||||
| ATP6ATP synthase F0 subunit 6 | 681 bp | 36.56% | −0.349 | −0.023 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 41.33% | −0.284 | −0.070 | |||||
| ND3NADH dehydrogenase subunit 3 | 346 bp | 35.26% | −0.377 | 0.000 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 34.68% | −0.204 | −0.082 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,378 bp | 35.99% | −0.391 | +0.002 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,821 bp | 34.43% | −0.381 | +0.028 | |||||
| ND6NADH dehydrogenase subunit 6 | 528 bp | 34.66% | −0.585 | +0.287 | |||||
| CYTBCytochrome b | 1,140 bp | 37.98% | −0.312 | −0.007 | |||||
| 12S rRNA12S ribosomal RNA | 957 bp | 39.19% | −0.072 | +0.213 | |||||
| 16S rRNA16S ribosomal RNA | 1,567 bp | 36.06% | −0.058 | +0.184 | |||||
| D-loopControl region (D-loop) | 926 bp | 37.91% | −0.225 | −0.054 |
Codon usage
Counts per codon, darker is more frequent3,799 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.6%
UUU161
UUC91
Leu L15.5%
UUA178
UUG12
CUU84
CUC69
CUA212
CUG32
Ile I8.9%
AUU250
AUC87
Met M6.8%
AUA212
AUG46
Val V5.3%
GUU64
GUC35
GUA83
GUG18
Ser S7.4%
UCU50
UCC53
UCA116
UCG4
AGU27
AGC30
Pro P5.1%
CCU59
CCC43
CCA88
CCG2
Thr T7.9%
ACU70
ACC64
ACA155
ACG12
Ala A6.2%
GCU60
GCC66
GCA106
GCG3
Tyr Y3.5%
UAU93
UAC39
His H2.4%
CAU46
CAC45
Gln Q2.4%
CAA83
CAG9
Asn N4.4%
AAU90
AAC77
Lys K2.5%
AAA89
AAG7
Asp D1.8%
GAU36
GAC31
Glu E2.6%
GAA84
GAG15
Cys C0.6%
UGU12
UGC11
Trp W2.7%
UGA96
UGG8
Arg R1.7%
CGU7
CGC14
CGA40
CGG2
Gly G5.7%
GGU47
GGC55
GGA91
GGG22
Stop 0.2%
UAA7
UAG0
AGA1
AGG0
Genome map
38 annotated features in NC_011821.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (36.1%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 70 | 70 bp | + | – |
| 12S rRNA | Ribosomal RNA | 71 | 1,027 | 957 bp | + | 39.2% |
| tRNA-Val | Transfer RNA | 1,028 | 1,094 | 67 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,095 | 2,661 | 1,567 bp | + | 36.1% |
| tRNA-Leu (UUR) | Transfer RNA | 2,662 | 2,736 | 75 bp | + | – |
| ND1 | Protein-coding gene | 2,739 | 3,694 | 956 bp | + | 35.8% |
| tRNA-Ile | Transfer RNA | 3,695 | 3,763 | 69 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,761 | 3,832 | 72 bp | − | – |
| tRNA-Met | Transfer RNA | 3,835 | 3,903 | 69 bp | + | – |
| ND2 | Protein-coding gene | 3,904 | 4,946 | 1,043 bp | + | 32.8% |
| tRNA-Trp | Transfer RNA | 4,947 | 5,012 | 66 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,015 | 5,082 | 68 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,084 | 5,156 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,189 | 5,251 | 63 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,254 | 5,322 | 69 bp | − | – |
| COX1 | Protein-coding gene | 5,325 | 6,869 | 1,545 bp | + | 36.0% |
| tRNA-Ser (UCN) | Transfer RNA | 6,867 | 6,937 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 6,943 | 7,010 | 68 bp | + | – |
| COX2 | Protein-coding gene | 7,012 | 7,695 | 684 bp | + | 33.8% |
| tRNA-Lys | Transfer RNA | 7,699 | 7,765 | 67 bp | + | – |
| ATP8 | Protein-coding gene | 7,767 | 7,967 | 201 bp | + | 29.4% |
| ATP6 | Protein-coding gene | 7,928 | 8,608 | 681 bp | + | 36.6% |
| COX3 | Protein-coding gene | 8,608 | 9,391 | 784 bp | + | 41.3% |
| tRNA-Gly | Transfer RNA | 9,392 | 9,460 | 69 bp | + | – |
| ND3 | Protein-coding gene | 9,461 | 9,806 | 346 bp | + | 35.3% |
| tRNA-Arg | Transfer RNA | 9,808 | 9,876 | 69 bp | + | – |
| ND4L | Protein-coding gene | 9,877 | 10,173 | 297 bp | + | 34.7% |
| ND4 | Protein-coding gene | 10,167 | 11,544 | 1,378 bp | + | 36.0% |
| tRNA-His | Transfer RNA | 11,545 | 11,613 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,614 | 11,673 | 60 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,675 | 11,744 | 70 bp | + | – |
| ND5 | Protein-coding gene | 11,745 | 13,565 | 1,821 bp | + | 34.4% |
| ND6 | Protein-coding gene | 13,549 | 14,076 | 528 bp | − | 34.7% |
| tRNA-Glu | Transfer RNA | 14,077 | 14,145 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,150 | 15,289 | 1,140 bp | + | 38.0% |
| tRNA-Thr | Transfer RNA | 15,292 | 15,363 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,362 | 15,429 | 68 bp | − | – |
| D-loop | Control region | 15,430 | 16,355 | 926 bp | – | 37.9% |