Dryophytes japonicus

Japanese treefrog

Maximum lifespan

8.9 yr

AnAge record

mtDNA size

19,519 bp

RefSeq NC_010232.1

GC content

39.91%

Whole genome

Non-coding

4,177 bp

D-loop 4,103 bp

Where Japanese treefrog sits among 2,335 species

Whole-genome GC content against maximum lifespan. Japanese treefrog has the 1,693rd longest lifespan of them.

This species
Other amphibians
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome19,519 bp

GC skew (G − C) / (G + C): −0.274
AT skew (A − T) / (A + T): −0.015

Life history

Maximum lifespan: 8.9 years
Female sexual maturity: 3.5 years
Male sexual maturity: 3.5 years
Litter or clutch size: 920

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 00076)

About this record

Lifespan source: AnAge build 15
Based on: an animal in captivity
Data quality: acceptable, small sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Renamed in build 2
In the database since: build 1 (2015-07-01)
Last changed: build 2 (2026-11-13)
Earlier name: Hyla japonica

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome19,519 bp

Protein-coding11,283 bp

12S rRNA933 bp

16S rRNA1,600 bp

All tRNA1,526 bp

D-loop4,103 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Dryophytes japonicus genes

ND1NADH dehydrogenase subunit 1	961 bp	25.9%	30.9%	14.3%	28.9%	43.18%	−0.340	−0.088
ND2NADH dehydrogenase subunit 2	1,035 bp	30.5%	31.0%	10.0%	28.5%	38.45%	−0.482	−0.008
COX1Cytochrome c oxidase subunit I	1,542 bp	26.9%	31.6%	17.1%	24.4%	41.44%	−0.177	−0.081
COX2Cytochrome c oxidase subunit II	688 bp	28.6%	31.0%	15.6%	24.9%	40.41%	−0.230	−0.039
ATP8ATP synthase F0 subunit 8	165 bp	31.5%	30.3%	10.3%	27.9%	38.18%	−0.460	+0.020
ATP6ATP synthase F0 subunit 6	683 bp	26.1%	35.3%	10.2%	28.4%	38.65%	−0.470	−0.150
COX3Cytochrome c oxidase subunit III	785 bp	26.9%	29.8%	16.4%	26.9%	43.31%	−0.241	−0.052
ND3NADH dehydrogenase subunit 3	340 bp	22.6%	34.7%	15.9%	26.8%	42.65%	−0.255	−0.210
ND4LNADH dehydrogenase subunit 4L	303 bp	27.4%	33.3%	12.2%	27.1%	39.27%	−0.378	−0.098
ND4NADH dehydrogenase subunit 4	1,365 bp	27.6%	32.5%	12.7%	27.3%	39.93%	−0.365	−0.080
ND5NADH dehydrogenase subunit 5	1,803 bp	29.9%	32.1%	12.6%	25.4%	37.99%	−0.337	−0.036
ND6NADH dehydrogenase subunit 6	498 bp	40.8%	15.7%	9.6%	33.9%	43.57%	−0.558	+0.445
CYTBCytochrome b	1,149 bp	27.4%	31.5%	13.4%	27.7%	41.08%	−0.347	−0.069
12S rRNA12S ribosomal RNA	933 bp	32.3%	23.9%	19.5%	24.3%	43.84%	−0.110	+0.149
16S rRNA16S ribosomal RNA	1,600 bp	36.4%	26.5%	16.9%	20.2%	37.06%	−0.089	+0.158
D-loopControl region (D-loop)	4,103 bp	28.6%	33.1%	14.3%	24.0%	38.31%	−0.254	−0.074

Codon usage

Counts per codon, darker is more frequent

Gene

3,770 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.7%

UUU153

UUC98

Leu L15.8%

UUA141

UUG33

CUU145

CUC86

CUA158

CUG34

Ile I9.2%

AUU225

AUC120

Met M4.4%

AUA134

AUG33

Val V5.2%

GUU66

GUC48

GUA66

GUG15

Ser S8.3%

UCU83

UCC77

UCA93

UCG6

AGU16

AGC38

Pro P5.3%

CCU44

CCC57

CCA88

CCG11

Thr T7.0%

ACU64

ACC87

ACA105

ACG7

Ala A8.3%

GCU94

GCC111

GCA103

GCG4

Tyr Y3.1%

UAU53

UAC64

His H2.5%

CAU30

CAC63

Gln Q2.3%

CAA81

CAG7

Asn N3.4%

AAU72

AAC58

Lys K2.4%

AAA79

AAG10

Asp D1.9%

GAU31

GAC41

Glu E2.5%

GAA77

GAG17

Cys C0.9%

UGU9

UGC24

Trp W2.9%

UGA89

UGG22

Arg R1.9%

CGU13

CGC8

CGA44

CGG5

Gly G5.9%

GGU43

GGC52

GGA82

GGG45

Stop 0.2%

UAA3

UAG1

AGA3

AGG1

Genome map

38 annotated features in NC_010232.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (39.9%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Dryophytes japonicus (NC_010232.1)
Feature	Type	Start	End	Length	Strand	GC
D-loop	Control region	1	4,103	4,103 bp	–	38.3%
tRNA-Leu (CUN)	Transfer RNA	4,104	4,175	72 bp	+	–
tRNA-Thr	Transfer RNA	4,176	4,244	69 bp	+	–
tRNA-Pro	Transfer RNA	4,244	4,312	69 bp	−	–
tRNA-Phe	Transfer RNA	4,312	4,379	68 bp	+	–
12S rRNA	Ribosomal RNA	4,380	5,312	933 bp	+	43.8%
tRNA-Val	Transfer RNA	5,313	5,381	69 bp	+	–
16S rRNA	Ribosomal RNA	5,382	6,981	1,600 bp	+	37.1%
tRNA-Leu (UUR)	Transfer RNA	6,982	7,054	73 bp	+	–
ND1	Protein-coding gene	7,055	8,015	961 bp	+	43.2%
tRNA-Ile	Transfer RNA	8,016	8,086	71 bp	+	–
tRNA-Gln	Transfer RNA	8,086	8,156	71 bp	−	–
tRNA-Met	Transfer RNA	8,156	8,224	69 bp	+	–
ND2	Protein-coding gene	8,225	9,259	1,035 bp	+	38.5%
tRNA-Trp	Transfer RNA	9,263	9,332	70 bp	+	–
tRNA-Ala	Transfer RNA	9,333	9,401	69 bp	−	–
tRNA-Asn	Transfer RNA	9,402	9,474	73 bp	−	–
tRNA-Cys	Transfer RNA	9,502	9,565	64 bp	−	–
tRNA-Tyr	Transfer RNA	9,566	9,635	70 bp	−	–
COX1	Protein-coding gene	9,640	11,181	1,542 bp	+	41.4%
tRNA-Ser (UCN)	Transfer RNA	11,183	11,253	71 bp	−	–
tRNA-Asp	Transfer RNA	11,255	11,323	69 bp	+	–
COX2	Protein-coding gene	11,325	12,012	688 bp	+	40.4%
tRNA-Lys	Transfer RNA	12,013	12,084	72 bp	+	–
ATP8	Protein-coding gene	12,085	12,249	165 bp	+	38.2%
ATP6	Protein-coding gene	12,240	12,922	683 bp	+	38.7%
COX3	Protein-coding gene	12,923	13,707	785 bp	+	43.3%
tRNA-Gly	Transfer RNA	13,708	13,776	69 bp	+	–
ND3	Protein-coding gene	13,777	14,116	340 bp	+	42.7%
tRNA-Arg	Transfer RNA	14,117	14,184	68 bp	+	–
ND4L	Protein-coding gene	14,185	14,487	303 bp	+	39.3%
ND4	Protein-coding gene	14,481	15,845	1,365 bp	+	39.9%
tRNA-His	Transfer RNA	15,846	15,914	69 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	15,915	15,981	67 bp	+	–
ND5	Protein-coding gene	16,017	17,819	1,803 bp	+	38.0%
ND6	Protein-coding gene	17,803	18,300	498 bp	−	43.6%
tRNA-Glu	Transfer RNA	18,301	18,368	68 bp	−	–
CYTB	Protein-coding gene	18,371	19,519	1,149 bp	+	41.1%