Kaloula pulchra
Malaysian narrowmouth toad
GC content
40.95%
Whole genome
Non-coding
1,496 bp
D-loop 1,413 bp
Where Malaysian narrowmouth toad sits among 2,335 species
Whole-genome GC content against maximum lifespan. Malaysian narrowmouth toad has the 1,492nd longest lifespan of them.
- This species
- Other amphibians
- Other classes
Base composition
Whole genome16,818 bp
- GC skew (G − C) / (G + C)
- −0.298
- AT skew (A − T) / (A + T)
- +0.038
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in captivity
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- Unchanged since build 1
- In the database since
- build 1 (2015-07-01)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,818 bp
Protein-coding11,272 bp
12S rRNA941 bp
16S rRNA1,592 bp
All tRNA1,530 bp
D-loop1,413 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 960 bp | 37.19% | −0.333 | −0.045 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,038 bp | 40.27% | −0.435 | +0.077 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 41.46% | −0.207 | −0.040 | |||||
| COX2Cytochrome c oxidase subunit II | 688 bp | 40.41% | −0.324 | +0.088 | |||||
| ATP8ATP synthase F0 subunit 8 | 165 bp | 36.36% | −0.600 | +0.105 | |||||
| ATP6ATP synthase F0 subunit 6 | 682 bp | 38.42% | −0.443 | −0.067 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 44.39% | −0.264 | −0.041 | |||||
| ND3NADH dehydrogenase subunit 3 | 340 bp | 42.06% | −0.343 | −0.127 | |||||
| ND4LNADH dehydrogenase subunit 4L | 285 bp | 43.16% | −0.366 | −0.012 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,360 bp | 38.90% | −0.376 | −0.057 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,792 bp | 39.36% | −0.384 | −0.006 | |||||
| ND6NADH dehydrogenase subunit 6 | 504 bp | 43.25% | −0.541 | +0.378 | |||||
| CYTBCytochrome b | 1,143 bp | 44.27% | −0.356 | +0.024 | |||||
| 12S rRNA12S ribosomal RNA | 941 bp | 46.02% | −0.127 | +0.181 | |||||
| 16S rRNA16S ribosomal RNA | 1,592 bp | 39.76% | −0.109 | +0.205 | |||||
| D-loopControl region (D-loop) | 1,413 bp | 38.06% | −0.367 | +0.016 |
Codon usage
Counts per codon, darker is more frequent3,761 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F7.2%
UUU151
UUC118
Leu L15.3%
UUA113
UUG26
CUU133
CUC77
CUA191
CUG37
Ile I9.3%
AUU229
AUC121
Met M4.7%
AUA126
AUG52
Val V4.7%
GUU53
GUC39
GUA74
GUG10
Ser S7.4%
UCU36
UCC46
UCA147
UCG5
AGU16
AGC28
Pro P5.4%
CCU25
CCC26
CCA144
CCG9
Thr T7.9%
ACU52
ACC95
ACA146
ACG5
Ala A8.8%
GCU83
GCC145
GCA97
GCG6
Tyr Y2.8%
UAU43
UAC63
His H2.5%
CAU36
CAC57
Gln Q2.4%
CAA84
CAG5
Asn N3.4%
AAU56
AAC71
Lys K2.3%
AAA74
AAG12
Asp D2.0%
GAU32
GAC44
Glu E2.3%
GAA74
GAG12
Cys C0.7%
UGU13
UGC14
Trp W3.0%
UGA96
UGG15
Arg R1.9%
CGU7
CGC15
CGA47
CGG4
Gly G5.8%
GGU32
GGC68
GGA87
GGG32
Stop 0.2%
UAA3
UAG2
AGA1
AGG1
Genome map
38 annotated features in NC_006405.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (40.9%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Leu (CUN) | Transfer RNA | 1 | 73 | 73 bp | + | – |
| tRNA-Thr | Transfer RNA | 75 | 144 | 70 bp | + | – |
| tRNA-Pro | Transfer RNA | 145 | 213 | 69 bp | − | – |
| tRNA-Phe | Transfer RNA | 215 | 284 | 70 bp | + | – |
| 12S rRNA | Ribosomal RNA | 285 | 1,225 | 941 bp | + | 46.0% |
| tRNA-Val | Transfer RNA | 1,222 | 1,291 | 70 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,292 | 2,883 | 1,592 bp | + | 39.8% |
| tRNA-Leu (UUR) | Transfer RNA | 2,884 | 2,957 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,958 | 3,917 | 960 bp | + | 37.2% |
| tRNA-Ile | Transfer RNA | 3,917 | 3,987 | 71 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,987 | 4,057 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 4,057 | 4,125 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,127 | 5,164 | 1,038 bp | + | 40.3% |
| tRNA-Trp | Transfer RNA | 5,165 | 5,229 | 65 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,230 | 5,302 | 73 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,310 | 5,382 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,408 | 5,474 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,474 | 5,540 | 67 bp | − | – |
| COX1 | Protein-coding gene | 5,545 | 7,095 | 1,551 bp | + | 41.5% |
| tRNA-Ser (UCN) | Transfer RNA | 7,088 | 7,156 | 69 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,159 | 7,227 | 69 bp | + | – |
| COX2 | Protein-coding gene | 7,230 | 7,917 | 688 bp | + | 40.4% |
| tRNA-Lys | Transfer RNA | 7,918 | 7,986 | 69 bp | + | – |
| ATP8 | Protein-coding gene | 7,987 | 8,151 | 165 bp | + | 36.4% |
| ATP6 | Protein-coding gene | 8,142 | 8,823 | 682 bp | + | 38.4% |
| COX3 | Protein-coding gene | 8,824 | 9,607 | 784 bp | + | 44.4% |
| tRNA-Gly | Transfer RNA | 9,608 | 9,676 | 69 bp | + | – |
| ND3 | Protein-coding gene | 9,677 | 10,016 | 340 bp | + | 42.1% |
| tRNA-Arg | Transfer RNA | 10,017 | 10,086 | 70 bp | + | – |
| ND4L | Protein-coding gene | 10,090 | 10,374 | 285 bp | + | 43.2% |
| ND4 | Protein-coding gene | 10,368 | 11,727 | 1,360 bp | + | 38.9% |
| tRNA-His | Transfer RNA | 11,728 | 11,796 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,797 | 11,863 | 67 bp | + | – |
| ND5 | Protein-coding gene | 11,898 | 13,689 | 1,792 bp | + | 39.4% |
| ND6 | Protein-coding gene | 13,687 | 14,190 | 504 bp | − | 43.3% |
| tRNA-Glu | Transfer RNA | 14,192 | 14,260 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,263 | 15,405 | 1,143 bp | + | 44.3% |
| D-loop | Control region | 15,406 | 16,818 | 1,413 bp | – | 38.1% |