Lamna ditropis

Salmon shark

Maximum lifespan

20 yr

AnAge record

mtDNA size

16,699 bp

RefSeq NC_024269.1

GC content

41.82%

Whole genome

Non-coding

1,120 bp

D-loop 1,065 bp

Where Salmon shark sits among 2,335 species

Whole-genome GC content against maximum lifespan. Salmon shark has the 904th longest lifespan of them.

This species
Other sharks and rays
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,699 bp

GC skew (G − C) / (G + C): −0.294
AT skew (A − T) / (A + T): +0.018

Life history

Maximum lifespan: 20 years
Adult weight: 96.3 kg
Female sexual maturity: 7.5 years
Litter or clutch size: 4.5

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 01799)

About this record

Lifespan source: AnAge build 15
Based on: an animal in the wild
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Unchanged since build 1
In the database since: build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome16,699 bp

Protein-coding11,402 bp

12S rRNA958 bp

16S rRNA1,673 bp

All tRNA1,550 bp

D-loop1,065 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Lamna ditropis genes

ND1NADH dehydrogenase subunit 1	975 bp	27.2%	30.4%	13.1%	29.3%	42.46%	−0.382	−0.055
ND2NADH dehydrogenase subunit 2	1,043 bp	27.7%	27.4%	11.4%	33.5%	44.87%	−0.491	+0.005
COX1Cytochrome c oxidase subunit I	1,554 bp	25.7%	30.6%	17.4%	26.3%	43.76%	−0.203	−0.087
COX2Cytochrome c oxidase subunit II	691 bp	28.9%	28.1%	17.2%	25.8%	42.98%	−0.199	+0.015
ATP8ATP synthase F0 subunit 8	168 bp	37.5%	29.8%	8.3%	24.4%	32.74%	−0.491	+0.115
ATP6ATP synthase F0 subunit 6	684 bp	27.5%	29.5%	12.9%	30.1%	42.98%	−0.401	−0.036
COX3Cytochrome c oxidase subunit III	786 bp	26.7%	28.9%	16.4%	28.0%	44.40%	−0.261	−0.039
ND3NADH dehydrogenase subunit 3	349 bp	21.2%	33.5%	16.6%	28.7%	45.27%	−0.266	−0.225
ND4LNADH dehydrogenase subunit 4L	297 bp	25.6%	33.7%	12.1%	28.6%	40.74%	−0.405	−0.136
ND4NADH dehydrogenase subunit 4	1,381 bp	28.5%	29.2%	12.7%	29.6%	42.29%	−0.401	−0.011
ND5NADH dehydrogenase subunit 5	1,830 bp	29.3%	28.7%	11.7%	30.2%	41.91%	−0.439	+0.010
ND6NADH dehydrogenase subunit 6	522 bp	40.0%	18.0%	10.2%	31.8%	41.95%	−0.516	+0.380
CYTBCytochrome b	1,145 bp	25.9%	29.9%	13.1%	31.1%	44.19%	−0.407	−0.070
12S rRNA12S ribosomal RNA	958 bp	33.5%	23.5%	19.0%	24.0%	43.01%	−0.117	+0.176
16S rRNA16S ribosomal RNA	1,673 bp	35.4%	26.3%	17.2%	21.0%	38.26%	−0.100	+0.148
D-loopControl region (D-loop)	1,065 bp	29.3%	33.1%	15.6%	22.1%	37.65%	−0.172	−0.060

Codon usage

Counts per codon, darker is more frequent

Gene

3,806 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.1%

UUU105

UUC129

Leu L17.4%

UUA127

UUG20

CUU128

CUC147

CUA194

CUG48

Ile I8.7%

AUU185

AUC145

Met M4.6%

AUA123

AUG51

Val V5.1%

GUU47

GUC56

GUA60

GUG32

Ser S7.1%

UCU43

UCC83

UCA86

UCG4

AGU17

AGC38

Pro P5.4%

CCU58

CCC68

CCA71

CCG9

Thr T7.1%

ACU45

ACC107

ACA108

ACG9

Ala A7.6%

GCU63

GCC129

GCA92

GCG6

Tyr Y3.2%

UAU58

UAC64

His H2.7%

CAU28

CAC74

Gln Q2.6%

CAA81

CAG18

Asn N3.8%

AAU62

AAC82

Lys K2.1%

AAA71

AAG9

Asp D1.9%

GAU31

GAC40

Glu E2.7%

GAA82

GAG20

Cys C0.7%

UGU14

UGC11

Trp W3.2%

UGA101

UGG20

Arg R1.9%

CGU13

CGC15

CGA38

CGG6

Gly G6.0%

GGU56

GGC79

GGA63

GGG29

Stop 0.2%

UAA7

UAG0

AGA0

AGG1

Genome map

38 annotated features in NC_024269.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (41.8%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Lamna ditropis (NC_024269.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	70	70 bp	+	–
12S rRNA	Ribosomal RNA	71	1,028	958 bp	+	43.0%
tRNA-Val	Transfer RNA	1,026	1,097	72 bp	+	–
16S rRNA	Ribosomal RNA	1,098	2,770	1,673 bp	+	38.3%
tRNA-Leu (UUR)	Transfer RNA	2,770	2,844	75 bp	+	–
ND1	Protein-coding gene	2,845	3,819	975 bp	+	42.5%
tRNA-Ile	Transfer RNA	3,822	3,890	69 bp	+	–
tRNA-Gln	Transfer RNA	3,889	3,960	72 bp	−	–
tRNA-Met	Transfer RNA	3,961	4,029	69 bp	+	–
ND2	Protein-coding gene	4,030	5,072	1,043 bp	+	44.9%
tRNA-Trp	Transfer RNA	5,073	5,143	71 bp	+	–
tRNA-Ala	Transfer RNA	5,145	5,213	69 bp	−	–
tRNA-Asn	Transfer RNA	5,214	5,286	73 bp	−	–
tRNA-Cys	Transfer RNA	5,320	5,386	67 bp	−	–
tRNA-Tyr	Transfer RNA	5,388	5,457	70 bp	−	–
COX1	Protein-coding gene	5,459	7,012	1,554 bp	+	43.8%
tRNA-Ser (UCN)	Transfer RNA	7,015	7,085	71 bp	−	–
tRNA-Asp	Transfer RNA	7,090	7,159	70 bp	+	–
COX2	Protein-coding gene	7,164	7,854	691 bp	+	43.0%
tRNA-Lys	Transfer RNA	7,855	7,928	74 bp	+	–
ATP8	Protein-coding gene	7,930	8,097	168 bp	+	32.7%
ATP6	Protein-coding gene	8,088	8,771	684 bp	+	43.0%
COX3	Protein-coding gene	8,771	9,556	786 bp	+	44.4%
tRNA-Gly	Transfer RNA	9,559	9,628	70 bp	+	–
ND3	Protein-coding gene	9,629	9,977	349 bp	+	45.3%
tRNA-Arg	Transfer RNA	9,978	10,047	70 bp	+	–
ND4L	Protein-coding gene	10,048	10,344	297 bp	+	40.7%
ND4	Protein-coding gene	10,338	11,718	1,381 bp	+	42.3%
tRNA-His	Transfer RNA	11,719	11,787	69 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,788	11,855	68 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,856	11,927	72 bp	+	–
ND5	Protein-coding gene	11,928	13,757	1,830 bp	+	41.9%
ND6	Protein-coding gene	13,753	14,274	522 bp	−	42.0%
tRNA-Glu	Transfer RNA	14,275	14,344	70 bp	−	–
CYTB	Protein-coding gene	14,347	15,491	1,145 bp	+	44.2%
tRNA-Thr	Transfer RNA	15,492	15,563	72 bp	+	–
tRNA-Pro	Transfer RNA	15,566	15,634	69 bp	−	–
D-loop	Control region	15,635	16,699	1,065 bp	–	37.7%