Lepidopsetta polyxystra
Northern rock sole
GC content
46.05%
Whole genome
Non-coding
1,426 bp
Including the D-loop
Where Northern rock sole sits among 2,335 species
Whole-genome GC content against maximum lifespan. Northern rock sole has the 1,052nd longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome17,055 bp
- GC skew (G − C) / (G + C)
- −0.249
- AT skew (A − T) / (A + T)
- +0.019
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an animal in the wild
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome17,055 bp
Protein-coding11,415 bp
12S rRNA949 bp
16S rRNA1,715 bp
All tRNA1,550 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 47.59% | −0.263 | −0.123 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 48.71% | −0.399 | −0.045 | |||||
| COX1Cytochrome c oxidase subunit I | 1,560 bp | 46.15% | −0.167 | −0.081 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 45.44% | −0.204 | +0.013 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 42.26% | −0.465 | +0.113 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 44.44% | −0.395 | −0.121 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 47.52% | −0.287 | −0.087 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 48.14% | −0.321 | −0.182 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 53.54% | −0.371 | −0.174 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 46.42% | −0.289 | −0.065 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 45.68% | −0.324 | +0.019 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 46.36% | −0.380 | +0.429 | |||||
| CYTBCytochrome b | 1,141 bp | 47.24% | −0.310 | −0.123 | |||||
| 12S rRNA12S ribosomal RNA | 949 bp | 48.16% | −0.081 | +0.203 | |||||
| 16S rRNA16S ribosomal RNA | 1,715 bp | 46.06% | −0.106 | +0.215 |
Codon usage
Counts per codon, darker is more frequent3,810 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.2%
UUU122
UUC116
Leu L17.1%
UUA80
UUG27
CUU167
CUC162
CUA160
CUG54
Ile I6.9%
AUU155
AUC107
Met M3.8%
AUA74
AUG71
Val V6.4%
GUU79
GUC64
GUA68
GUG34
Ser S6.6%
UCU53
UCC61
UCA64
UCG16
AGU10
AGC46
Pro P5.9%
CCU59
CCC80
CCA66
CCG21
Thr T7.6%
ACU51
ACC99
ACA122
ACG19
Ala A9.2%
GCU74
GCC130
GCA128
GCG19
Tyr Y2.9%
UAU36
UAC74
His H2.8%
CAU28
CAC77
Gln Q2.5%
CAA78
CAG16
Asn N3.0%
AAU32
AAC81
Lys K2.0%
AAA59
AAG17
Asp D2.1%
GAU16
GAC64
Glu E2.5%
GAA67
GAG29
Cys C0.6%
UGU8
UGC15
Trp W3.2%
UGA95
UGG27
Arg R2.0%
CGU10
CGC15
CGA39
CGG13
Gly G6.5%
GGU50
GGC81
GGA65
GGG53
Stop 0.2%
UAA6
UAG1
AGA0
AGG0
Genome map
37 annotated features in NC_082812.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (46.1%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 37 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,017 | 949 bp | + | 48.2% |
| tRNA-Val | Transfer RNA | 1,018 | 1,090 | 73 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,091 | 2,805 | 1,715 bp | + | 46.1% |
| tRNA-Leu (UUR) | Transfer RNA | 2,806 | 2,879 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,880 | 3,854 | 975 bp | + | 47.6% |
| tRNA-Ile | Transfer RNA | 3,860 | 3,930 | 71 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,930 | 4,000 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 4,000 | 4,068 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,069 | 5,113 | 1,045 bp | + | 48.7% |
| tRNA-Trp | Transfer RNA | 5,114 | 5,185 | 72 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,187 | 5,255 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,257 | 5,329 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,366 | 5,430 | 65 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,431 | 5,498 | 68 bp | − | – |
| COX1 | Protein-coding gene | 5,500 | 7,059 | 1,560 bp | + | 46.2% |
| tRNA-Ser (UCN) | Transfer RNA | 7,060 | 7,130 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,145 | 7,215 | 71 bp | + | – |
| COX2 | Protein-coding gene | 7,222 | 7,912 | 691 bp | + | 45.4% |
| tRNA-Lys | Transfer RNA | 7,913 | 7,985 | 73 bp | + | – |
| ATP8 | Protein-coding gene | 7,987 | 8,154 | 168 bp | + | 42.3% |
| ATP6 | Protein-coding gene | 8,145 | 8,828 | 684 bp | + | 44.4% |
| COX3 | Protein-coding gene | 8,828 | 9,612 | 785 bp | + | 47.5% |
| tRNA-Gly | Transfer RNA | 9,613 | 9,684 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,685 | 10,033 | 349 bp | + | 48.1% |
| tRNA-Arg | Transfer RNA | 10,034 | 10,102 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,103 | 10,399 | 297 bp | + | 53.5% |
| ND4 | Protein-coding gene | 10,393 | 11,773 | 1,381 bp | + | 46.4% |
| tRNA-His | Transfer RNA | 11,774 | 11,843 | 70 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,844 | 11,910 | 67 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,915 | 11,987 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,988 | 13,826 | 1,839 bp | + | 45.7% |
| ND6 | Protein-coding gene | 13,823 | 14,344 | 522 bp | − | 46.4% |
| tRNA-Glu | Transfer RNA | 14,345 | 14,413 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,418 | 15,558 | 1,141 bp | + | 47.2% |
| tRNA-Thr | Transfer RNA | 15,559 | 15,631 | 73 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,632 | 15,702 | 71 bp | − | – |