Loxodon macrorhinus
Sliteye shark
GC content
38.94%
Whole genome
Non-coding
1,118 bp
D-loop 1,063 bp
Where Sliteye shark sits among 2,335 species
Whole-genome GC content against maximum lifespan. Sliteye shark has the 1,696th longest lifespan of them.
- This species
- Other sharks and rays
- Other classes
Base composition
Whole genome16,702 bp
- GC skew (G − C) / (G + C)
- −0.325
- AT skew (A − T) / (A + T)
- +0.039
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an observed animal, origin not stated
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,702 bp
Protein-coding11,407 bp
12S rRNA955 bp
16S rRNA1,670 bp
All tRNA1,552 bp
D-loop1,063 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 42.46% | −0.469 | +0.020 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 39.71% | −0.552 | +0.051 | |||||
| COX1Cytochrome c oxidase subunit I | 1,557 bp | 39.31% | −0.206 | −0.101 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 37.63% | −0.269 | +0.049 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 31.55% | −0.547 | +0.078 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 37.28% | −0.451 | +0.002 | |||||
| COX3Cytochrome c oxidase subunit III | 786 bp | 41.73% | −0.250 | −0.026 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 40.12% | −0.314 | −0.120 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 44.11% | −0.481 | −0.108 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 40.33% | −0.472 | +0.027 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,830 bp | 38.74% | −0.498 | +0.067 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 38.12% | −0.598 | +0.381 | |||||
| CYTBCytochrome b | 1,145 bp | 40.09% | −0.394 | −0.073 | |||||
| 12S rRNA12S ribosomal RNA | 955 bp | 41.47% | −0.106 | +0.174 | |||||
| 16S rRNA16S ribosomal RNA | 1,670 bp | 36.29% | −0.102 | +0.147 | |||||
| D-loopControl region (D-loop) | 1,063 bp | 33.11% | −0.199 | −0.024 |
Codon usage
Counts per codon, darker is more frequent3,808 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.2%
UUU113
UUC124
Leu L17.2%
UUA165
UUG18
CUU122
CUC128
CUA214
CUG8
Ile I9.0%
AUU218
AUC126
Met M4.4%
AUA142
AUG27
Val V4.4%
GUU59
GUC30
GUA69
GUG11
Ser S7.0%
UCU40
UCC79
UCA95
UCG1
AGU17
AGC35
Pro P5.5%
CCU44
CCC59
CCA104
CCG1
Thr T7.6%
ACU60
ACC112
ACA117
ACG1
Ala A7.3%
GCU63
GCC110
GCA98
GCG6
Tyr Y3.2%
UAU65
UAC58
His H2.9%
CAU52
CAC57
Gln Q2.5%
CAA90
CAG4
Asn N4.1%
AAU68
AAC87
Lys K2.3%
AAA85
AAG1
Asp D1.9%
GAU31
GAC41
Glu E2.5%
GAA91
GAG6
Cys C0.7%
UGU12
UGC13
Trp W3.2%
UGA118
UGG4
Arg R1.9%
CGU11
CGC18
CGA44
CGG0
Gly G6.0%
GGU59
GGC58
GGA93
GGG18
Stop 0.2%
UAA7
UAG0
AGA0
AGG1
Genome map
38 annotated features in NC_029843.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (38.9%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 70 | 70 bp | + | – |
| 12S rRNA | Ribosomal RNA | 71 | 1,025 | 955 bp | + | 41.5% |
| tRNA-Val | Transfer RNA | 1,026 | 1,097 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,098 | 2,767 | 1,670 bp | + | 36.3% |
| tRNA-Leu (UUR) | Transfer RNA | 2,768 | 2,842 | 75 bp | + | – |
| ND1 | Protein-coding gene | 2,843 | 3,817 | 975 bp | + | 42.5% |
| tRNA-Ile | Transfer RNA | 3,818 | 3,887 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,889 | 3,960 | 72 bp | − | – |
| tRNA-Met | Transfer RNA | 3,961 | 4,029 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,030 | 5,074 | 1,045 bp | + | 39.7% |
| tRNA-Trp | Transfer RNA | 5,075 | 5,145 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,147 | 5,215 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,216 | 5,288 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,323 | 5,389 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,391 | 5,460 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,462 | 7,018 | 1,557 bp | + | 39.3% |
| tRNA-Ser (UCN) | Transfer RNA | 7,019 | 7,089 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,093 | 7,162 | 70 bp | + | – |
| COX2 | Protein-coding gene | 7,170 | 7,860 | 691 bp | + | 37.6% |
| tRNA-Lys | Transfer RNA | 7,861 | 7,934 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,936 | 8,103 | 168 bp | + | 31.6% |
| ATP6 | Protein-coding gene | 8,094 | 8,777 | 684 bp | + | 37.3% |
| COX3 | Protein-coding gene | 8,777 | 9,562 | 786 bp | + | 41.7% |
| tRNA-Gly | Transfer RNA | 9,565 | 9,634 | 70 bp | + | – |
| ND3 | Protein-coding gene | 9,635 | 9,983 | 349 bp | + | 40.1% |
| tRNA-Arg | Transfer RNA | 9,984 | 10,053 | 70 bp | + | – |
| ND4L | Protein-coding gene | 10,054 | 10,350 | 297 bp | + | 44.1% |
| ND4 | Protein-coding gene | 10,344 | 11,724 | 1,381 bp | + | 40.3% |
| tRNA-His | Transfer RNA | 11,725 | 11,793 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,794 | 11,860 | 67 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,861 | 11,932 | 72 bp | + | – |
| ND5 | Protein-coding gene | 11,933 | 13,762 | 1,830 bp | + | 38.7% |
| ND6 | Protein-coding gene | 13,758 | 14,279 | 522 bp | − | 38.1% |
| tRNA-Glu | Transfer RNA | 14,280 | 14,349 | 70 bp | − | – |
| CYTB | Protein-coding gene | 14,352 | 15,496 | 1,145 bp | + | 40.1% |
| tRNA-Thr | Transfer RNA | 15,497 | 15,568 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,571 | 15,639 | 69 bp | − | – |
| D-loop | Control region | 15,640 | 16,702 | 1,063 bp | – | 33.1% |