Loxops coccineus
Akepa
GC content
45.89%
Whole genome
Non-coding
1,340 bp
D-loop 1,244 bp
Where Akepa sits among 2,335 species
Whole-genome GC content against maximum lifespan. Akepa has the 1,564th longest lifespan of them.
- This species
- Other birds
- Other classes
Base composition
Whole genome15,589 bp
- GC skew (G − C) / (G + C)
- −0.398
- AT skew (A − T) / (A + T)
- +0.119
Life history
- Maximum lifespan
- 10 years
- Adult weight
- 10.4 g
- Female sexual maturity
- 365 days
- Male sexual maturity
- 2 years
- Gestation or incubation
- 15 days
- Litter or clutch size
- 1.5
- Litters per year
- 1
Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 00908)
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- Updated in build 2
- In the database since
- build 1 (2015-07-01)
- Last changed
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome15,589 bp
Protein-coding11,379 bp
12S rRNA346 bp
16S rRNA1,061 bp
All tRNA1,472 bp
D-loop1,244 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 978 bp | 46.12% | −0.348 | −0.028 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,040 bp | 45.53% | −0.535 | +0.106 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 48.32% | −0.327 | +0.076 | |||||
| COX2Cytochrome c oxidase subunit II | 685 bp | 44.88% | −0.336 | +0.119 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 45.24% | −0.684 | +0.065 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 44.74% | −0.529 | +0.095 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 48.85% | −0.358 | +0.047 | |||||
| ND3NADH dehydrogenase subunit 3 | 351 bp | 45.01% | −0.418 | +0.036 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 49.16% | −0.493 | +0.046 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,378 bp | 46.95% | −0.546 | +0.168 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,818 bp | 46.21% | −0.519 | +0.164 | |||||
| ND6NADH dehydrogenase subunit 6 | 519 bp | 50.10% | −0.615 | +0.591 | |||||
| CYTBCytochrome b | 1,143 bp | 47.59% | −0.456 | +0.102 | |||||
| 12S rRNA12S ribosomal RNA | 346 bp | 45.95% | −0.044 | +0.123 | |||||
| 16S rRNA16S ribosomal RNA | 1,061 bp | 44.77% | −0.120 | +0.215 | |||||
| D-loopControl region (D-loop) | 1,244 bp | 43.17% | −0.359 | +0.018 |
Codon usage
Counts per codon, darker is more frequent3,794 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F5.7%
UUU40
UUC177
Leu L17.7%
UUA56
UUG19
CUU64
CUC155
CUA330
CUG48
Ile I7.7%
AUU84
AUC207
Met M4.2%
AUA125
AUG36
Val V5.1%
GUU33
GUC55
GUA77
GUG27
Ser S7.8%
UCU42
UCC98
UCA94
UCG4
AGU8
AGC51
Pro P5.9%
CCU46
CCC77
CCA90
CCG10
Thr T8.2%
ACU50
ACC144
ACA115
ACG3
Ala A8.1%
GCU42
GCC146
GCA102
GCG17
Tyr Y2.9%
UAU15
UAC94
His H2.7%
CAU17
CAC84
Gln Q2.5%
CAA88
CAG7
Asn N3.6%
AAU15
AAC122
Lys K2.3%
AAA83
AAG3
Asp D1.7%
GAU11
GAC55
Glu E2.4%
GAA77
GAG13
Cys C0.7%
UGU4
UGC24
Trp W2.8%
UGA97
UGG10
Arg R1.9%
CGU8
CGC13
CGA45
CGG5
Gly G5.9%
GGU21
GGC61
GGA109
GGG32
Stop 0.2%
UAA4
UAG2
AGA2
AGG1
Genome map
37 annotated features in NC_025612.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA21
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (45.9%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 37 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| D-loop | Control region | 1 | 1,244 | 1,244 bp | – | 43.2% |
| tRNA-Phe | Transfer RNA | 1,245 | 1,312 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 1,313 | 1,658 | 346 bp | + | 46.0% |
| 16S rRNA | Ribosomal RNA | 1,659 | 2,719 | 1,061 bp | + | 44.8% |
| tRNA-Leu (UUR) | Transfer RNA | 2,720 | 2,794 | 75 bp | + | – |
| ND1 | Protein-coding gene | 2,809 | 3,786 | 978 bp | + | 46.1% |
| tRNA-Ile | Transfer RNA | 3,792 | 3,865 | 74 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,869 | 3,939 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,939 | 4,007 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,008 | 5,047 | 1,040 bp | + | 45.5% |
| tRNA-Trp | Transfer RNA | 5,048 | 5,118 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,120 | 5,188 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,197 | 5,269 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,270 | 5,336 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,336 | 5,406 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,408 | 6,958 | 1,551 bp | + | 48.3% |
| tRNA-Ser (UCN) | Transfer RNA | 6,950 | 7,022 | 73 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,026 | 7,094 | 69 bp | + | – |
| COX2 | Protein-coding gene | 7,105 | 7,789 | 685 bp | + | 44.9% |
| tRNA-Lys | Transfer RNA | 7,790 | 7,858 | 69 bp | + | – |
| ATP8 | Protein-coding gene | 7,860 | 8,027 | 168 bp | + | 45.2% |
| ATP6 | Protein-coding gene | 8,018 | 8,701 | 684 bp | + | 44.7% |
| COX3 | Protein-coding gene | 8,710 | 9,493 | 784 bp | + | 48.9% |
| tRNA-Gly | Transfer RNA | 9,494 | 9,562 | 69 bp | + | – |
| ND3 | Protein-coding gene | 9,563 | 9,913 | 351 bp | + | 45.0% |
| tRNA-Arg | Transfer RNA | 9,915 | 9,984 | 70 bp | + | – |
| ND4L | Protein-coding gene | 9,986 | 10,282 | 297 bp | + | 49.2% |
| ND4 | Protein-coding gene | 10,276 | 11,653 | 1,378 bp | + | 47.0% |
| tRNA-His | Transfer RNA | 11,654 | 11,723 | 70 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,724 | 11,789 | 66 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,789 | 11,859 | 71 bp | + | – |
| ND5 | Protein-coding gene | 11,860 | 13,677 | 1,818 bp | + | 46.2% |
| CYTB | Protein-coding gene | 13,684 | 14,826 | 1,143 bp | + | 47.6% |
| tRNA-Thr | Transfer RNA | 14,830 | 14,898 | 69 bp | + | – |
| tRNA-Pro | Transfer RNA | 14,920 | 14,989 | 70 bp | − | – |
| ND6 | Protein-coding gene | 14,999 | 15,517 | 519 bp | − | 50.1% |
| tRNA-Glu | Transfer RNA | 15,519 | 15,589 | 71 bp | − | – |