Microhyla ornata

Ornate narrow-mouthed frog

Maximum lifespan

5 yr

AnAge record

mtDNA size

16,730 bp

RefSeq NC_009422.1

GC content

39.92%

Whole genome

Non-coding

1,412 bp

D-loop 1,334 bp

Where Ornate narrow-mouthed frog sits among 2,335 species

Whole-genome GC content against maximum lifespan. Ornate narrow-mouthed frog has the 1,990th longest lifespan of them.

This species
Other amphibians
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,730 bp

GC skew (G − C) / (G + C): −0.270
AT skew (A − T) / (A + T): −0.035

Life history

Maximum lifespan: 5 years
Birth weight: 1.1 kg
Female sexual maturity: 547 days
Male sexual maturity: 182 days

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 00095)

About this record

Lifespan source: AnAge build 15
Based on: an animal in the wild
Data quality: acceptable, small sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Unchanged since build 1
In the database since: build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome16,730 bp

Protein-coding11,271 bp

12S rRNA952 bp

16S rRNA1,577 bp

All tRNA1,531 bp

D-loop1,334 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Microhyla ornata genes

ND1NADH dehydrogenase subunit 1	958 bp	28.2%	34.9%	13.0%	23.9%	36.95%	−0.294	−0.106
ND2NADH dehydrogenase subunit 2	1,033 bp	29.8%	33.0%	10.4%	26.8%	37.17%	−0.443	−0.051
COX1Cytochrome c oxidase subunit I	1,551 bp	25.7%	32.4%	17.0%	25.0%	41.91%	−0.191	−0.117
COX2Cytochrome c oxidase subunit II	688 bp	29.7%	32.4%	14.5%	23.4%	37.94%	−0.234	−0.045
ATP8ATP synthase F0 subunit 8	165 bp	32.7%	34.5%	7.9%	24.8%	32.73%	−0.519	−0.027
ATP6ATP synthase F0 subunit 6	682 bp	25.7%	36.5%	11.6%	26.2%	37.83%	−0.388	−0.175
COX3Cytochrome c oxidase subunit III	784 bp	24.5%	32.0%	16.8%	26.7%	43.50%	−0.226	−0.133
ND3NADH dehydrogenase subunit 3	340 bp	25.3%	36.5%	14.1%	24.1%	38.24%	−0.262	−0.181
ND4LNADH dehydrogenase subunit 4L	285 bp	27.4%	35.4%	11.6%	25.6%	37.19%	−0.377	−0.128
ND4NADH dehydrogenase subunit 4	1,363 bp	27.3%	34.2%	12.2%	26.3%	38.52%	−0.368	−0.112
ND5NADH dehydrogenase subunit 5	1,792 bp	29.7%	32.9%	12.3%	25.1%	37.39%	−0.343	−0.052
ND6NADH dehydrogenase subunit 6	504 bp	37.7%	19.8%	9.5%	32.9%	42.46%	−0.551	+0.310
CYTBCytochrome b	1,146 bp	25.8%	31.7%	14.6%	27.9%	42.50%	−0.314	−0.102
12S rRNA12S ribosomal RNA	952 bp	29.8%	24.7%	19.4%	26.1%	45.48%	−0.146	+0.094
16S rRNA16S ribosomal RNA	1,577 bp	35.6%	25.2%	17.7%	21.4%	39.13%	−0.096	+0.171
D-loopControl region (D-loop)	1,334 bp	28.3%	33.4%	13.7%	24.7%	38.38%	−0.285	−0.083

Codon usage

Counts per codon, darker is more frequent

Gene

3,761 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F7.0%

UUU193

UUC70

Leu L15.6%

UUA161

UUG30

CUU167

CUC77

CUA129

CUG23

Ile I9.0%

AUU243

AUC96

Met M4.3%

AUA119

AUG43

Val V5.4%

GUU80

GUC47

GUA69

GUG7

Ser S8.1%

UCU76

UCC37

UCA131

UCG6

AGU22

AGC32

Pro P5.5%

CCU52

CCC52

CCA94

CCG9

Thr T7.8%

ACU94

ACC82

ACA109

ACG7

Ala A8.3%

GCU79

GCC117

GCA114

GCG4

Tyr Y3.0%

UAU64

UAC48

His H2.4%

CAU29

CAC62

Gln Q2.2%

CAA76

CAG6

Asn N3.3%

AAU66

AAC59

Lys K2.2%

AAA71

AAG10

Asp D1.9%

GAU29

GAC43

Glu E2.4%

GAA71

GAG20

Cys C0.7%

UGU11

UGC15

Trp W3.0%

UGA102

UGG9

Arg R1.9%

CGU21

CGC10

CGA35

CGG7

Gly G5.9%

GGU48

GGC56

GGA68

GGG49

Stop 0.1%

UAA3

UAG0

AGA1

AGG1

Genome map

38 annotated features in NC_009422.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (39.9%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Microhyla ornata (NC_009422.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Leu (CUN)	Transfer RNA	1	73	73 bp	+	–
tRNA-Thr	Transfer RNA	75	143	69 bp	+	–
tRNA-Pro	Transfer RNA	144	212	69 bp	−	–
tRNA-Phe	Transfer RNA	214	283	70 bp	+	–
12S rRNA	Ribosomal RNA	284	1,235	952 bp	+	45.5%
tRNA-Val	Transfer RNA	1,232	1,300	69 bp	+	–
16S rRNA	Ribosomal RNA	1,301	2,877	1,577 bp	+	39.1%
tRNA-Leu (UUR)	Transfer RNA	2,878	2,951	74 bp	+	–
ND1	Protein-coding gene	2,953	3,910	958 bp	+	37.0%
tRNA-Ile	Transfer RNA	3,911	3,981	71 bp	+	–
tRNA-Gln	Transfer RNA	3,981	4,051	71 bp	−	–
tRNA-Met	Transfer RNA	4,051	4,119	69 bp	+	–
ND2	Protein-coding gene	4,120	5,152	1,033 bp	+	37.2%
tRNA-Trp	Transfer RNA	5,153	5,222	70 bp	+	–
tRNA-Ala	Transfer RNA	5,223	5,291	69 bp	−	–
tRNA-Asn	Transfer RNA	5,294	5,366	73 bp	−	–
tRNA-Cys	Transfer RNA	5,395	5,460	66 bp	−	–
tRNA-Tyr	Transfer RNA	5,461	5,527	67 bp	−	–
COX1	Protein-coding gene	5,532	7,082	1,551 bp	+	41.9%
tRNA-Ser (UCN)	Transfer RNA	7,074	7,144	71 bp	−	–
tRNA-Asp	Transfer RNA	7,146	7,214	69 bp	+	–
COX2	Protein-coding gene	7,217	7,904	688 bp	+	37.9%
tRNA-Lys	Transfer RNA	7,905	7,973	69 bp	+	–
ATP8	Protein-coding gene	7,974	8,138	165 bp	+	32.7%
ATP6	Protein-coding gene	8,129	8,810	682 bp	+	37.8%
COX3	Protein-coding gene	8,811	9,594	784 bp	+	43.5%
tRNA-Gly	Transfer RNA	9,595	9,663	69 bp	+	–
ND3	Protein-coding gene	9,664	10,003	340 bp	+	38.2%
tRNA-Arg	Transfer RNA	10,004	10,073	70 bp	+	–
ND4L	Protein-coding gene	10,076	10,360	285 bp	+	37.2%
ND4	Protein-coding gene	10,354	11,716	1,363 bp	+	38.5%
tRNA-His	Transfer RNA	11,717	11,785	69 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,786	11,852	67 bp	+	–
ND5	Protein-coding gene	11,887	13,678	1,792 bp	+	37.4%
ND6	Protein-coding gene	13,676	14,179	504 bp	−	42.5%
tRNA-Glu	Transfer RNA	14,181	14,249	69 bp	+	–
CYTB	Protein-coding gene	14,251	15,396	1,146 bp	+	42.5%
D-loop	Control region	15,397	16,730	1,334 bp	–	38.4%