Muntiacus muntjak
Indian muntjac
GC content
37.85%
Whole genome
Non-coding
983 bp
D-loop 912 bp
Where Indian muntjac sits among 2,335 species
Whole-genome GC content against maximum lifespan. Indian muntjac has the 1,001st longest lifespan of them.
- This species
- Other mammals
- Other classes
Base composition
Whole genome16,354 bp
- GC skew (G − C) / (G + C)
- −0.294
- AT skew (A − T) / (A + T)
- +0.067
Life history
- Maximum lifespan
- 18.8 years
- Adult weight
- 21 kg
- Birth weight
- 1.2 kg
- Female sexual maturity
- 272 days
- Male sexual maturity
- 332 days
- Gestation or incubation
- 210 days
- Litter or clutch size
- 1.2
Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 02032)
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in captivity
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- Unchanged since build 1
- In the database since
- build 1 (2015-07-01)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,354 bp
Protein-coding11,341 bp
12S rRNA956 bp
16S rRNA1,567 bp
All tRNA1,513 bp
D-loop912 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 957 bp | 37.83% | −0.381 | +0.008 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,044 bp | 33.91% | −0.475 | +0.101 | |||||
| COX1Cytochrome c oxidase subunit I | 1,545 bp | 39.48% | −0.174 | −0.046 | |||||
| COX2Cytochrome c oxidase subunit II | 684 bp | 37.43% | −0.227 | +0.079 | |||||
| ATP8ATP synthase F0 subunit 8 | 201 bp | 31.34% | −0.619 | +0.188 | |||||
| ATP6ATP synthase F0 subunit 6 | 681 bp | 38.62% | −0.392 | +0.014 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 42.47% | −0.303 | −0.069 | |||||
| ND3NADH dehydrogenase subunit 3 | 346 bp | 37.86% | −0.359 | −0.005 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 36.70% | −0.303 | −0.043 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,378 bp | 38.24% | −0.431 | +0.015 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,821 bp | 37.40% | −0.427 | +0.061 | |||||
| ND6NADH dehydrogenase subunit 6 | 528 bp | 36.74% | −0.577 | +0.311 | |||||
| CYTBCytochrome b | 1,140 bp | 40.26% | −0.359 | +0.034 | |||||
| 12S rRNA12S ribosomal RNA | 956 bp | 40.27% | −0.127 | +0.229 | |||||
| 16S rRNA16S ribosomal RNA | 1,567 bp | 35.23% | −0.054 | +0.174 | |||||
| D-loopControl region (D-loop) | 912 bp | 39.36% | −0.209 | −0.027 |
Codon usage
Counts per codon, darker is more frequent3,801 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.5%
UUU134
UUC113
Leu L15.8%
UUA110
UUG21
CUU85
CUC89
CUA257
CUG37
Ile I9.0%
AUU236
AUC107
Met M6.6%
AUA209
AUG41
Val V4.8%
GUU43
GUC38
GUA84
GUG18
Ser S7.4%
UCU51
UCC62
UCA102
UCG6
AGU23
AGC38
Pro P5.1%
CCU53
CCC50
CCA86
CCG4
Thr T8.1%
ACU63
ACC74
ACA154
ACG16
Ala A6.5%
GCU52
GCC81
GCA105
GCG8
Tyr Y3.4%
UAU74
UAC54
His H2.6%
CAU36
CAC61
Gln Q2.4%
CAA89
CAG3
Asn N4.2%
AAU83
AAC78
Lys K2.4%
AAA82
AAG11
Asp D1.7%
GAU33
GAC33
Glu E2.6%
GAA75
GAG23
Cys C0.6%
UGU8
UGC15
Trp W2.7%
UGA99
UGG5
Arg R1.7%
CGU10
CGC12
CGA41
CGG0
Gly G5.7%
GGU30
GGC68
GGA100
GGG18
Stop 0.3%
UAA8
UAG1
AGA1
AGG0
Genome map
38 annotated features in NC_004563.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (37.9%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,025 | 956 bp | + | 40.3% |
| tRNA-Val | Transfer RNA | 1,026 | 1,094 | 69 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,095 | 2,661 | 1,567 bp | + | 35.2% |
| tRNA-Leu (UUR) | Transfer RNA | 2,662 | 2,736 | 75 bp | + | – |
| ND1 | Protein-coding gene | 2,739 | 3,695 | 957 bp | + | 37.8% |
| tRNA-Ile | Transfer RNA | 3,695 | 3,763 | 69 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,761 | 3,832 | 72 bp | − | – |
| tRNA-Met | Transfer RNA | 3,835 | 3,903 | 69 bp | + | – |
| ND2 | Protein-coding gene | 3,904 | 4,947 | 1,044 bp | + | 33.9% |
| tRNA-Trp | Transfer RNA | 4,946 | 5,013 | 68 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,015 | 5,083 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,085 | 5,157 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,191 | 5,258 | 68 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,259 | 5,327 | 69 bp | − | – |
| COX1 | Protein-coding gene | 5,329 | 6,873 | 1,545 bp | + | 39.5% |
| tRNA-Ser (UCN) | Transfer RNA | 6,871 | 6,939 | 69 bp | − | – |
| tRNA-Asp | Transfer RNA | 6,947 | 7,014 | 68 bp | + | – |
| COX2 | Protein-coding gene | 7,016 | 7,699 | 684 bp | + | 37.4% |
| tRNA-Lys | Transfer RNA | 7,703 | 7,771 | 69 bp | + | – |
| ATP8 | Protein-coding gene | 7,773 | 7,973 | 201 bp | + | 31.3% |
| ATP6 | Protein-coding gene | 7,934 | 8,614 | 681 bp | + | 38.6% |
| COX3 | Protein-coding gene | 8,614 | 9,397 | 784 bp | + | 42.5% |
| tRNA-Gly | Transfer RNA | 9,398 | 9,466 | 69 bp | + | – |
| ND3 | Protein-coding gene | 9,467 | 9,812 | 346 bp | + | 37.9% |
| tRNA-Arg | Transfer RNA | 9,814 | 9,882 | 69 bp | + | – |
| ND4L | Protein-coding gene | 9,883 | 10,179 | 297 bp | + | 36.7% |
| ND4 | Protein-coding gene | 10,173 | 11,550 | 1,378 bp | + | 38.2% |
| tRNA-His | Transfer RNA | 11,551 | 11,619 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,620 | 11,679 | 60 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,681 | 11,749 | 69 bp | + | – |
| ND5 | Protein-coding gene | 11,750 | 13,570 | 1,821 bp | + | 37.4% |
| ND6 | Protein-coding gene | 13,554 | 14,081 | 528 bp | − | 36.7% |
| tRNA-Glu | Transfer RNA | 14,082 | 14,150 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,155 | 15,294 | 1,140 bp | + | 40.3% |
| tRNA-Thr | Transfer RNA | 15,298 | 15,367 | 70 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,367 | 15,432 | 66 bp | − | – |
| D-loop | Control region | 15,443 | 16,354 | 912 bp | – | 39.4% |