Mustelus manazo

Starspotted smooth-hound

Maximum lifespan

10 yr

AnAge record

mtDNA size

16,707 bp

RefSeq NC_000890.1

GC content

38.28%

Whole genome

Non-coding

1,125 bp

D-loop 1,068 bp

Where Starspotted smooth-hound sits among 2,335 species

Whole-genome GC content against maximum lifespan. Starspotted smooth-hound has the 1,566th longest lifespan of them.

This species
Other sharks and rays
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,707 bp

GC skew (G − C) / (G + C): −0.275
AT skew (A − T) / (A + T): −0.003

Life history

Maximum lifespan: 10 years
Adult weight: 3.1 kg
Female sexual maturity: 3 years
Male sexual maturity: 2.1 years
Litter or clutch size: 7.5

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 01785)

About this record

Lifespan source: AnAge build 15
Based on: an animal in the wild
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Unchanged since build 1
In the database since: build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome16,707 bp

Protein-coding11,412 bp

12S rRNA953 bp

16S rRNA1,670 bp

All tRNA1,552 bp

D-loop1,068 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Mustelus manazo genes

ND1NADH dehydrogenase subunit 1	975 bp	29.1%	31.1%	12.0%	27.8%	39.80%	−0.397	−0.032
ND2NADH dehydrogenase subunit 2	1,047 bp	30.7%	31.7%	9.9%	27.7%	37.63%	−0.472	−0.017
COX1Cytochrome c oxidase subunit I	1,557 bp	27.4%	33.8%	15.8%	23.0%	38.79%	−0.185	−0.104
COX2Cytochrome c oxidase subunit II	691 bp	32.3%	29.7%	14.5%	23.6%	38.06%	−0.240	+0.042
ATP8ATP synthase F0 subunit 8	168 bp	36.9%	35.1%	8.3%	19.6%	27.98%	−0.404	+0.025
ATP6ATP synthase F0 subunit 6	684 bp	29.7%	34.6%	10.7%	25.0%	35.67%	−0.402	−0.077
COX3Cytochrome c oxidase subunit III	786 bp	27.7%	30.4%	15.8%	26.1%	41.86%	−0.246	−0.046
ND3NADH dehydrogenase subunit 3	351 bp	23.4%	33.9%	15.4%	27.4%	42.74%	−0.280	−0.184
ND4LNADH dehydrogenase subunit 4L	297 bp	25.3%	32.7%	12.1%	30.0%	42.09%	−0.424	−0.128
ND4NADH dehydrogenase subunit 4	1,381 bp	29.6%	32.8%	11.5%	26.1%	37.58%	−0.387	−0.051
ND5NADH dehydrogenase subunit 5	1,830 bp	31.1%	32.9%	10.3%	25.7%	36.01%	−0.429	−0.028
ND6NADH dehydrogenase subunit 6	522 bp	42.5%	19.5%	8.8%	29.1%	37.93%	−0.535	+0.370
CYTBCytochrome b	1,146 bp	26.3%	33.5%	13.2%	27.1%	40.23%	−0.345	−0.121
12S rRNA12S ribosomal RNA	953 bp	32.9%	25.3%	19.3%	22.5%	41.76%	−0.075	+0.132
16S rRNA16S ribosomal RNA	1,670 bp	35.7%	27.2%	17.0%	20.1%	37.13%	−0.084	+0.135
D-loopControl region (D-loop)	1,068 bp	31.8%	34.5%	14.0%	19.7%	33.71%	−0.167	−0.040

Codon usage

Counts per codon, darker is more frequent

Gene

3,811 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.4%

UUU143

UUC99

Leu L17.6%

UUA215

UUG15

CUU177

CUC93

CUA159

CUG12

Ile I8.8%

AUU237

AUC100

Met M4.3%

AUA133

AUG32

Val V4.6%

GUU68

GUC23

GUA72

GUG13

Ser S7.0%

UCU52

UCC62

UCA91

UCG7

AGU16

AGC38

Pro P5.5%

CCU70

CCC40

CCA96

CCG4

Thr T7.2%

ACU74

ACC86

ACA109

ACG6

Ala A7.5%

GCU69

GCC114

GCA97

GCG5

Tyr Y3.1%

UAU72

UAC48

His H2.8%

CAU47

CAC58

Gln Q2.5%

CAA89

CAG8

Asn N4.0%

AAU72

AAC81

Lys K2.2%

AAA77

AAG7

Asp D1.9%

GAU44

GAC29

Glu E2.5%

GAA87

GAG9

Cys C0.6%

UGU10

UGC14

Trp W3.2%

UGA112

UGG9

Arg R1.9%

CGU15

CGC14

CGA36

CGG7

Gly G6.0%

GGU60

GGC57

GGA89

GGG22

Stop 0.3%

UAA7

UAG3

AGA0

AGG1

Genome map

38 annotated features in NC_000890.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (38.3%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Mustelus manazo (NC_000890.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	69	69 bp	+	–
12S rRNA	Ribosomal RNA	70	1,022	953 bp	+	41.8%
tRNA-Val	Transfer RNA	1,023	1,094	72 bp	+	–
16S rRNA	Ribosomal RNA	1,095	2,764	1,670 bp	+	37.1%
tRNA-Leu (UUR)	Transfer RNA	2,765	2,839	75 bp	+	–
ND1	Protein-coding gene	2,840	3,814	975 bp	+	39.8%
tRNA-Ile	Transfer RNA	3,815	3,883	69 bp	+	–
tRNA-Gln	Transfer RNA	3,885	3,956	72 bp	−	–
tRNA-Met	Transfer RNA	3,957	4,025	69 bp	+	–
ND2	Protein-coding gene	4,026	5,072	1,047 bp	+	37.6%
tRNA-Trp	Transfer RNA	5,071	5,141	71 bp	+	–
tRNA-Ala	Transfer RNA	5,143	5,211	69 bp	−	–
tRNA-Asn	Transfer RNA	5,212	5,284	73 bp	−	–
tRNA-Cys	Transfer RNA	5,320	5,388	69 bp	−	–
tRNA-Tyr	Transfer RNA	5,390	5,459	70 bp	−	–
COX1	Protein-coding gene	5,461	7,017	1,557 bp	+	38.8%
tRNA-Ser (UCN)	Transfer RNA	7,019	7,089	71 bp	−	–
tRNA-Asp	Transfer RNA	7,093	7,162	70 bp	+	–
COX2	Protein-coding gene	7,170	7,860	691 bp	+	38.1%
tRNA-Lys	Transfer RNA	7,861	7,934	74 bp	+	–
ATP8	Protein-coding gene	7,936	8,103	168 bp	+	28.0%
ATP6	Protein-coding gene	8,094	8,777	684 bp	+	35.7%
COX3	Protein-coding gene	8,777	9,562	786 bp	+	41.9%
tRNA-Gly	Transfer RNA	9,565	9,634	70 bp	+	–
ND3	Protein-coding gene	9,635	9,985	351 bp	+	42.7%
tRNA-Arg	Transfer RNA	9,984	10,053	70 bp	+	–
ND4L	Protein-coding gene	10,054	10,350	297 bp	+	42.1%
ND4	Protein-coding gene	10,344	11,724	1,381 bp	+	37.6%
tRNA-His	Transfer RNA	11,725	11,793	69 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,794	11,860	67 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,861	11,932	72 bp	+	–
ND5	Protein-coding gene	11,933	13,762	1,830 bp	+	36.0%
ND6	Protein-coding gene	13,758	14,279	522 bp	−	37.9%
tRNA-Glu	Transfer RNA	14,280	14,349	70 bp	−	–
CYTB	Protein-coding gene	14,352	15,497	1,146 bp	+	40.2%
tRNA-Thr	Transfer RNA	15,497	15,568	72 bp	+	–
tRNA-Pro	Transfer RNA	15,571	15,639	69 bp	−	–
D-loop	Control region	15,640	16,707	1,068 bp	–	33.7%