Neotrygon kuhlii
Blue-spotted stingray
GC content
39.48%
Whole genome
Non-coding
2,398 bp
D-loop 2,307 bp
Where Blue-spotted stingray sits among 2,335 species
Whole-genome GC content against maximum lifespan. Blue-spotted stingray has the 1,371st longest lifespan of them.
- This species
- Other sharks and rays
- Other classes
Base composition
Whole genome18,039 bp
- GC skew (G − C) / (G + C)
- −0.338
- AT skew (A − T) / (A + T)
- +0.055
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an estimate, not an observed animal
- Data quality
- low
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome18,039 bp
Protein-coding11,432 bp
12S rRNA960 bp
16S rRNA1,699 bp
All tRNA1,550 bp
D-loop2,307 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 978 bp | 41.62% | −0.464 | +0.033 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 39.29% | −0.543 | +0.052 | |||||
| COX1Cytochrome c oxidase subunit I | 1,563 bp | 41.08% | −0.202 | −0.071 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 39.65% | −0.270 | +0.041 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 36.31% | −0.475 | +0.159 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 40.79% | −0.484 | −0.007 | |||||
| COX3Cytochrome c oxidase subunit III | 786 bp | 44.40% | −0.307 | −0.053 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 43.55% | −0.382 | −0.066 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 41.75% | −0.484 | −0.110 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 40.41% | −0.470 | +0.028 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,842 bp | 39.20% | −0.488 | +0.038 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 38.51% | −0.582 | +0.377 | |||||
| CYTBCytochrome b | 1,143 bp | 41.73% | −0.426 | −0.012 | |||||
| 12S rRNA12S ribosomal RNA | 960 bp | 40.63% | −0.118 | +0.147 | |||||
| 16S rRNA16S ribosomal RNA | 1,699 bp | 38.85% | −0.127 | +0.193 | |||||
| D-loopControl region (D-loop) | 2,307 bp | 33.94% | −0.318 | +0.059 |
Codon usage
Counts per codon, darker is more frequent3,815 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.2%
UUU110
UUC127
Leu L17.4%
UUA140
UUG17
CUU121
CUC137
CUA231
CUG18
Ile I8.9%
AUU191
AUC150
Met M4.4%
AUA135
AUG32
Val V4.6%
GUU51
GUC42
GUA64
GUG17
Ser S7.1%
UCU47
UCC67
UCA103
UCG6
AGU16
AGC32
Pro P5.6%
CCU35
CCC53
CCA121
CCG4
Thr T7.9%
ACU63
ACC105
ACA129
ACG5
Ala A7.2%
GCU61
GCC113
GCA98
GCG2
Tyr Y3.3%
UAU64
UAC60
His H2.6%
CAU49
CAC50
Gln Q2.7%
CAA97
CAG5
Asn N4.0%
AAU61
AAC92
Lys K2.1%
AAA81
AAG1
Asp D1.8%
GAU26
GAC43
Glu E2.5%
GAA84
GAG11
Cys C0.6%
UGU9
UGC15
Trp W3.2%
UGA110
UGG11
Arg R1.8%
CGU13
CGC17
CGA39
CGG1
Gly G5.9%
GGU48
GGC75
GGA79
GGG22
Stop 0.2%
UAA8
UAG1
AGA0
AGG0
Genome map
38 annotated features in NC_021767.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (39.5%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,029 | 960 bp | + | 40.6% |
| tRNA-Val | Transfer RNA | 1,030 | 1,101 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,102 | 2,800 | 1,699 bp | + | 38.9% |
| tRNA-Leu (UUR) | Transfer RNA | 2,801 | 2,875 | 75 bp | + | – |
| ND1 | Protein-coding gene | 2,877 | 3,854 | 978 bp | + | 41.6% |
| tRNA-Ile | Transfer RNA | 3,857 | 3,924 | 68 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,933 | 4,004 | 72 bp | − | – |
| tRNA-Met | Transfer RNA | 4,008 | 4,078 | 71 bp | + | – |
| ND2 | Protein-coding gene | 4,079 | 5,124 | 1,046 bp | + | 39.3% |
| tRNA-Trp | Transfer RNA | 5,125 | 5,194 | 70 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,196 | 5,263 | 68 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,266 | 5,338 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,375 | 5,441 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,446 | 5,515 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,517 | 7,079 | 1,563 bp | + | 41.1% |
| tRNA-Ser (UCN) | Transfer RNA | 7,081 | 7,151 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,152 | 7,222 | 71 bp | + | – |
| COX2 | Protein-coding gene | 7,226 | 7,916 | 691 bp | + | 39.7% |
| tRNA-Lys | Transfer RNA | 7,917 | 7,990 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,992 | 8,159 | 168 bp | + | 36.3% |
| ATP6 | Protein-coding gene | 8,150 | 8,833 | 684 bp | + | 40.8% |
| COX3 | Protein-coding gene | 8,833 | 9,618 | 786 bp | + | 44.4% |
| tRNA-Gly | Transfer RNA | 9,625 | 9,693 | 69 bp | + | – |
| ND3 | Protein-coding gene | 9,694 | 10,042 | 349 bp | + | 43.6% |
| tRNA-Arg | Transfer RNA | 10,043 | 10,113 | 71 bp | + | – |
| ND4L | Protein-coding gene | 10,114 | 10,410 | 297 bp | + | 41.8% |
| ND4 | Protein-coding gene | 10,404 | 11,784 | 1,381 bp | + | 40.4% |
| tRNA-His | Transfer RNA | 11,785 | 11,853 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,855 | 11,921 | 67 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,924 | 11,995 | 72 bp | + | – |
| ND5 | Protein-coding gene | 11,996 | 13,837 | 1,842 bp | + | 39.2% |
| ND6 | Protein-coding gene | 13,842 | 14,363 | 522 bp | − | 38.5% |
| tRNA-Glu | Transfer RNA | 14,364 | 14,432 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,438 | 15,580 | 1,143 bp | + | 41.7% |
| tRNA-Thr | Transfer RNA | 15,586 | 15,657 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,663 | 15,732 | 70 bp | − | – |
| D-loop | Control region | 15,733 | 18,039 | 2,307 bp | – | 33.9% |