MitoAge

Nucifraga caryocatactes

Spotted nutcracker

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Maximum lifespan
19.9 yr
AnAge record
mtDNA size
16,914 bp
RefSeq NC_051558.1
GC content
44.86%
Whole genome
Non-coding
1,419 bp
D-loop 1,319 bp

Where Spotted nutcracker sits among 2,335 species

Whole-genome GC content against maximum lifespan. Spotted nutcracker has the 954th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Spotted nutcracker
  • This species
  • Other birds
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,914 bp
GC skew (G − C) / (G + C)
−0.335
AT skew (A − T) / (A + T)
+0.095

Life history

Maximum lifespan
19.9 years
Adult weight
183 g
Basal metabolic rate
1.346 W
Female sexual maturity
365 days
Male sexual maturity
365 days
Postnatal growth rate
0.28 per day

Lifespan from AnAge · AnAge record · other traits from AnAge build 15 (HAGRID 00835)

About this record

Lifespan source
AnAge build 15
Based on
an animal in the wild
Data quality
acceptable, large sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
New in build 2
In the database since
build 2 (2026-11-13)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,914 bp
Protein-coding11,382 bp
12S rRNA976 bp
16S rRNA1,603 bp
All tRNA1,543 bp
D-loop1,319 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1978 bp27.8%26.9%13.8%31.5%45.30%−0.391+0.017
ND2NADH dehydrogenase subunit 21,041 bp28.4%24.9%12.4%34.2%46.64%−0.468+0.067
COX1Cytochrome c oxidase subunit I1,551 bp27.6%25.3%17.1%30.0%47.13%−0.275+0.044
COX2Cytochrome c oxidase subunit II684 bp30.0%24.6%15.5%30.0%45.47%−0.318+0.099
ATP8ATP synthase F0 subunit 8168 bp33.9%26.8%4.8%34.5%39.29%−0.758+0.118
ATP6ATP synthase F0 subunit 6684 bp28.9%25.0%12.1%33.9%46.05%−0.473+0.073
COX3Cytochrome c oxidase subunit III784 bp26.8%24.5%16.6%32.1%48.72%−0.319+0.045
ND3NADH dehydrogenase subunit 3351 bp28.2%27.1%15.4%29.3%44.73%−0.312+0.021
ND4LNADH dehydrogenase subunit 4L297 bp23.9%26.3%13.8%36.0%49.83%−0.446−0.047
ND4NADH dehydrogenase subunit 41,378 bp31.5%25.0%10.9%32.7%43.54%−0.500+0.116
ND5NADH dehydrogenase subunit 51,818 bp30.6%25.3%11.9%32.2%44.11%−0.459+0.094
ND6NADH dehydrogenase subunit 6522 bp35.6%15.1%13.6%35.6%49.23%−0.447+0.404
CYTBCytochrome b1,143 bp28.9%26.5%12.9%31.7%44.62%−0.420+0.043
12S rRNA12S ribosomal RNA976 bp30.6%21.3%21.6%26.4%48.05%−0.100+0.179
16S rRNA16S ribosomal RNA1,603 bp34.2%22.2%20.5%23.1%43.61%−0.059+0.212
D-loopControl region (D-loop)1,319 bp27.8%30.2%13.7%28.3%42.00%−0.347−0.041

Codon usage

Counts per codon, darker is more frequent

3,798 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F5.8%
UUU67
UUC155
Leu L17.2%
UUA42
UUG0
CUU57
CUC141
CUA348
CUG66
Ile I7.7%
AUU95
AUC199
Met M4.6%
AUA116
AUG58
Val V5.5%
GUU44
GUC65
GUA77
GUG21
Ser S7.5%
UCU45
UCC99
UCA78
UCG5
AGU10
AGC46
Pro P5.8%
CCU46
CCC55
CCA108
CCG12
Thr T8.1%
ACU74
ACC104
ACA115
ACG13
Ala A8.1%
GCU63
GCC124
GCA103
GCG17
Tyr Y2.9%
UAU27
UAC85
His H2.7%
CAU25
CAC77
Gln Q2.7%
CAA94
CAG7
Asn N3.7%
AAU33
AAC106
Lys K2.2%
AAA78
AAG5
Asp D1.8%
GAU23
GAC45
Glu E2.3%
GAA68
GAG21
Cys C0.7%
UGU3
UGC25
Trp W2.8%
UGA102
UGG5
Arg R1.9%
CGU8
CGC11
CGA45
CGG7
Gly G5.8%
GGU37
GGC49
GGA93
GGG40
Stop 0.3%
UAA8
UAG0
AGA2
AGG1

Genome map

39 annotated features in NC_051558.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop2
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (44.9%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 39 features as a table
FeatureTypeStartEndLengthStrandGC
D-loopControl region11,2271,227 bp–42.0%
tRNA-PheTransfer RNA1,2281,29669 bp+–
12S rRNARibosomal RNA1,2972,272976 bp+48.1%
tRNA-ValTransfer RNA2,2732,34270 bp+–
16S rRNARibosomal RNA2,3433,9451,603 bp+43.6%
tRNA-Leu (UUR)Transfer RNA3,9464,02075 bp+–
ND1Protein-coding gene4,0305,007978 bp+45.3%
tRNA-IleTransfer RNA5,0165,08974 bp+–
tRNA-GlnTransfer RNA5,0955,16571 bp−–
tRNA-MetTransfer RNA5,1655,23369 bp+–
ND2Protein-coding gene5,2346,2741,041 bp+46.6%
tRNA-TrpTransfer RNA6,2766,34671 bp+–
tRNA-AlaTransfer RNA6,3486,41568 bp−–
tRNA-AsnTransfer RNA6,4256,49874 bp−–
tRNA-CysTransfer RNA6,5046,57067 bp−–
tRNA-TyrTransfer RNA6,5706,64071 bp−–
COX1Protein-coding gene6,6428,1921,551 bp+47.1%
tRNA-Ser (UCN)Transfer RNA8,1848,25673 bp−–
tRNA-AspTransfer RNA8,2628,33069 bp+–
COX2Protein-coding gene8,3399,022684 bp+45.5%
tRNA-LysTransfer RNA9,0249,09370 bp+–
ATP8Protein-coding gene9,0959,262168 bp+39.3%
ATP6Protein-coding gene9,2539,936684 bp+46.1%
COX3Protein-coding gene9,94410,727784 bp+48.7%
tRNA-GlyTransfer RNA10,72810,79669 bp+–
ND3Protein-coding gene10,79711,147351 bp+44.7%
tRNA-ArgTransfer RNA11,14911,21870 bp+–
ND4LProtein-coding gene11,22011,516297 bp+49.8%
ND4Protein-coding gene11,51012,8871,378 bp+43.5%
tRNA-HisTransfer RNA12,88812,95669 bp+–
tRNA-Ser (AGY)Transfer RNA12,95813,02164 bp+–
tRNA-Leu (CUN)Transfer RNA13,02213,09271 bp+–
ND5Protein-coding gene13,09314,9101,818 bp+44.1%
CYTBProtein-coding gene14,92316,0651,143 bp+44.6%
tRNA-ThrTransfer RNA16,06916,13769 bp+–
tRNA-ProTransfer RNA16,14916,21870 bp−–
ND6Protein-coding gene16,22816,749522 bp−49.2%
tRNA-GluTransfer RNA16,75116,82272 bp−–
D-loopControl region16,8231,2271,319 bp–42.0%

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