MitoAge

Nucifraga columbiana

Clark's nutcracker

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Maximum lifespan
17.4 yr
AnAge record
mtDNA size
16,905 bp
RefSeq NC_022839.1
GC content
44.19%
Whole genome
Non-coding
1,414 bp
D-loop 1,318 bp

Where Clark's nutcracker sits among 2,335 species

Whole-genome GC content against maximum lifespan. Clark's nutcracker has the 1,078th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Clark's nutcracker
  • This species
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  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,905 bp
GC skew (G − C) / (G + C)
−0.335
AT skew (A − T) / (A + T)
+0.093

Life history

Maximum lifespan
17.4 years
Adult weight
130 g
Birth weight
7.1 g
Female sexual maturity
365 days
Male sexual maturity
365 days
Gestation or incubation
18 days
Litter or clutch size
2.5
Litters per year
1

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 00836)

About this record

Lifespan source
AnAge build 15
Based on
an animal in the wild
Data quality
acceptable, small sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,905 bp
Protein-coding11,382 bp
12S rRNA976 bp
16S rRNA1,601 bp
All tRNA1,541 bp
D-loop1,318 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1978 bp27.8%27.1%14.0%31.1%45.09%−0.379+0.013
ND2NADH dehydrogenase subunit 21,041 bp30.3%25.6%11.2%32.9%44.19%−0.491+0.084
COX1Cytochrome c oxidase subunit I1,551 bp27.7%25.7%17.5%29.1%46.55%−0.249+0.037
COX2Cytochrome c oxidase subunit II684 bp29.5%24.6%16.2%29.7%45.91%−0.293+0.092
ATP8ATP synthase F0 subunit 8168 bp33.9%27.4%5.4%33.3%38.69%−0.723+0.107
ATP6ATP synthase F0 subunit 6684 bp30.6%24.7%10.1%34.6%44.74%−0.549+0.106
COX3Cytochrome c oxidase subunit III784 bp27.2%25.5%16.1%31.3%47.32%−0.321+0.031
ND3NADH dehydrogenase subunit 3351 bp28.8%25.1%14.8%31.3%46.15%−0.358+0.069
ND4LNADH dehydrogenase subunit 4L297 bp24.9%27.6%12.5%35.0%47.48%−0.475−0.051
ND4NADH dehydrogenase subunit 41,378 bp31.2%26.0%11.1%31.7%42.82%−0.481+0.091
ND5NADH dehydrogenase subunit 51,818 bp30.6%26.4%11.9%31.0%42.96%−0.444+0.074
ND6NADH dehydrogenase subunit 6522 bp36.8%15.5%12.6%35.1%47.70%−0.470+0.407
CYTBCytochrome b1,143 bp29.2%25.6%12.7%32.5%45.14%−0.438+0.065
12S rRNA12S ribosomal RNA976 bp30.9%21.1%21.6%26.3%47.95%−0.098+0.189
16S rRNA16S ribosomal RNA1,601 bp34.2%22.5%20.3%22.9%43.22%−0.061+0.206
D-loopControl region (D-loop)1,318 bp28.1%30.6%13.4%27.9%41.28%−0.353−0.041

Codon usage

Counts per codon, darker is more frequent

3,799 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.0%
UUU62
UUC165
Leu L17.1%
UUA56
UUG0
CUU78
CUC110
CUA348
CUG56
Ile I7.8%
AUU102
AUC193
Met M4.5%
AUA121
AUG51
Val V5.4%
GUU43
GUC63
GUA71
GUG27
Ser S7.4%
UCU52
UCC88
UCA76
UCG6
AGU11
AGC47
Pro P5.9%
CCU43
CCC60
CCA114
CCG6
Thr T8.2%
ACU79
ACC101
ACA126
ACG5
Ala A8.1%
GCU59
GCC128
GCA109
GCG13
Tyr Y2.9%
UAU34
UAC76
His H2.7%
CAU27
CAC76
Gln Q2.7%
CAA92
CAG9
Asn N3.6%
AAU44
AAC93
Lys K2.2%
AAA80
AAG4
Asp D1.8%
GAU16
GAC52
Glu E2.3%
GAA64
GAG25
Cys C0.7%
UGU6
UGC22
Trp W2.8%
UGA104
UGG3
Arg R1.9%
CGU10
CGC10
CGA47
CGG6
Gly G5.8%
GGU34
GGC50
GGA97
GGG38
Stop 0.3%
UAA8
UAG0
AGA2
AGG1

Genome map

38 annotated features in NC_022839.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (44.2%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA16969 bp+–
12S rRNARibosomal RNA701,045976 bp+48.0%
tRNA-ValTransfer RNA1,0461,11570 bp+–
16S rRNARibosomal RNA1,1162,7161,601 bp+43.2%
tRNA-Leu (UUR)Transfer RNA2,7172,79175 bp+–
ND1Protein-coding gene2,8013,778978 bp+45.1%
tRNA-IleTransfer RNA3,7873,86074 bp+–
tRNA-GlnTransfer RNA3,8663,93671 bp−–
tRNA-MetTransfer RNA3,9364,00469 bp+–
ND2Protein-coding gene4,0055,0451,041 bp+44.2%
tRNA-TrpTransfer RNA5,0475,11670 bp+–
tRNA-AlaTransfer RNA5,1185,18568 bp−–
tRNA-AsnTransfer RNA5,1945,26774 bp−–
tRNA-CysTransfer RNA5,2735,33967 bp−–
tRNA-TyrTransfer RNA5,3395,40971 bp−–
COX1Protein-coding gene5,4116,9611,551 bp+46.6%
tRNA-Ser (UCN)Transfer RNA6,9537,02573 bp−–
tRNA-AspTransfer RNA7,0317,09969 bp+–
COX2Protein-coding gene7,1087,791684 bp+45.9%
tRNA-LysTransfer RNA7,7937,86270 bp+–
ATP8Protein-coding gene7,8648,031168 bp+38.7%
ATP6Protein-coding gene8,0228,705684 bp+44.7%
COX3Protein-coding gene8,7139,496784 bp+47.3%
tRNA-GlyTransfer RNA9,4979,56569 bp+–
ND3Protein-coding gene9,5669,916351 bp+46.2%
tRNA-ArgTransfer RNA9,9189,98770 bp+–
ND4LProtein-coding gene9,98910,285297 bp+47.5%
ND4Protein-coding gene10,27911,6561,378 bp+42.8%
tRNA-HisTransfer RNA11,65711,72569 bp+–
tRNA-Ser (AGY)Transfer RNA11,72711,79064 bp+–
tRNA-Leu (CUN)Transfer RNA11,79111,86171 bp+–
ND5Protein-coding gene11,86213,6791,818 bp+43.0%
CYTBProtein-coding gene13,68914,8311,143 bp+45.1%
tRNA-ThrTransfer RNA14,83514,90369 bp+–
tRNA-ProTransfer RNA14,91514,98470 bp−–
ND6Protein-coding gene14,99415,515522 bp−47.7%
tRNA-GluTransfer RNA15,51715,58771 bp−–
D-loopControl region15,58816,9051,318 bp–41.3%

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