MitoAge

Oncorhynchus nerka

Sockeye salmon

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Maximum lifespan
8 yr
AnAge record
mtDNA size
16,658 bp
RefSeq NC_008615.1
GC content
46.19%
Whole genome
Non-coding
1,070 bp
D-loop 1,004 bp

Where Sockeye salmon sits among 2,335 species

Whole-genome GC content against maximum lifespan. Sockeye salmon has the 1,727th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Sockeye salmon
  • This species
  • Other ray-finned fishes
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,658 bp
GC skew (G − C) / (G + C)
−0.252
AT skew (A − T) / (A + T)
+0.026

Life history

Maximum lifespan
8 years
Adult weight
4.2 kg
Female sexual maturity
2 years
Male sexual maturity
2 years

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 04466)

About this record

Lifespan source
AnAge build 15
Based on
an animal in the wild
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,658 bp
Protein-coding11,414 bp
12S rRNA947 bp
16S rRNA1,678 bp
All tRNA1,551 bp
D-loop1,004 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1975 bp24.2%27.2%17.0%31.6%48.62%−0.300−0.058
ND2NADH dehydrogenase subunit 21,050 bp26.9%26.9%13.8%32.5%46.29%−0.4030.000
COX1Cytochrome c oxidase subunit I1,551 bp25.2%28.9%18.4%27.5%45.91%−0.197−0.068
COX2Cytochrome c oxidase subunit II691 bp27.2%28.8%16.6%27.4%43.99%−0.243−0.028
ATP8ATP synthase F0 subunit 8168 bp29.2%24.4%13.1%33.3%46.43%−0.436+0.089
ATP6ATP synthase F0 subunit 6684 bp25.6%30.3%12.7%31.4%44.15%−0.424−0.084
COX3Cytochrome c oxidase subunit III786 bp23.4%29.1%17.7%29.8%47.46%−0.255−0.109
ND3NADH dehydrogenase subunit 3351 bp22.2%28.2%16.8%32.8%49.57%−0.322−0.119
ND4LNADH dehydrogenase subunit 4L297 bp23.6%27.3%17.2%32.0%49.16%−0.301−0.073
ND4NADH dehydrogenase subunit 41,381 bp26.3%28.5%15.1%30.1%45.26%−0.331−0.040
ND5NADH dehydrogenase subunit 51,839 bp28.5%27.2%14.1%30.2%44.26%−0.364+0.024
ND6NADH dehydrogenase subunit 6522 bp37.4%13.4%13.4%35.8%49.23%−0.455+0.472
CYTBCytochrome b1,141 bp23.4%28.8%16.9%30.9%47.77%−0.292−0.104
12S rRNA12S ribosomal RNA947 bp29.6%20.1%23.2%27.1%50.37%−0.078+0.191
16S rRNA16S ribosomal RNA1,678 bp32.7%19.9%22.3%25.1%47.44%−0.060+0.243
D-loopControl region (D-loop)1,004 bp30.4%30.2%15.9%23.5%39.44%−0.192+0.003

Codon usage

Counts per codon, darker is more frequent

3,811 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.0%
UUU107
UUC121
Leu L17.2%
UUA103
UUG28
CUU150
CUC139
CUA177
CUG60
Ile I7.1%
AUU143
AUC129
Met M3.8%
AUA100
AUG46
Val V6.0%
GUU64
GUC52
GUA74
GUG39
Ser S6.3%
UCU52
UCC74
UCA54
UCG7
AGU9
AGC43
Pro P5.6%
CCU48
CCC87
CCA63
CCG15
Thr T8.3%
ACU80
ACC124
ACA94
ACG17
Ala A9.0%
GCU74
GCC152
GCA94
GCG24
Tyr Y2.9%
UAU42
UAC68
His H2.9%
CAU24
CAC86
Gln Q2.6%
CAA84
CAG14
Asn N3.0%
AAU41
AAC74
Lys K2.0%
AAA64
AAG11
Asp D1.9%
GAU27
GAC46
Glu E2.8%
GAA77
GAG28
Cys C0.7%
UGU13
UGC14
Trp W3.2%
UGA97
UGG24
Arg R2.0%
CGU10
CGC10
CGA43
CGG13
Gly G6.5%
GGU35
GGC71
GGA77
GGG65
Stop 0.3%
UAA6
UAG4
AGA0
AGG0

Genome map

38 annotated features in NC_008615.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (46.2%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
D-loopControl region11,0041,004 bp–39.4%
tRNA-PheTransfer RNA1,0051,07268 bp+–
12S rRNARibosomal RNA1,0732,019947 bp+50.4%
tRNA-ValTransfer RNA2,0202,09172 bp+–
16S rRNARibosomal RNA2,0923,7691,678 bp+47.4%
tRNA-Leu (UUR)Transfer RNA3,7703,84475 bp+–
ND1Protein-coding gene3,8454,819975 bp+48.6%
tRNA-IleTransfer RNA4,8244,89572 bp+–
tRNA-GlnTransfer RNA4,8934,96371 bp−–
tRNA-MetTransfer RNA4,9635,03169 bp+–
ND2Protein-coding gene5,0326,0811,050 bp+46.3%
tRNA-TrpTransfer RNA6,0846,15370 bp+–
tRNA-AlaTransfer RNA6,1566,22469 bp−–
tRNA-AsnTransfer RNA6,2266,29873 bp−–
tRNA-CysTransfer RNA6,3326,39867 bp−–
tRNA-TyrTransfer RNA6,3996,46971 bp−–
COX1Protein-coding gene6,4718,0211,551 bp+45.9%
tRNA-Ser (UCN)Transfer RNA8,0228,09271 bp−–
tRNA-AspTransfer RNA8,0978,17074 bp+–
COX2Protein-coding gene8,1858,875691 bp+44.0%
tRNA-LysTransfer RNA8,8768,94873 bp+–
ATP8Protein-coding gene8,9509,117168 bp+46.4%
ATP6Protein-coding gene9,1089,791684 bp+44.2%
COX3Protein-coding gene9,79110,576786 bp+47.5%
tRNA-GlyTransfer RNA10,57610,64570 bp+–
ND3Protein-coding gene10,64610,996351 bp+49.6%
tRNA-ArgTransfer RNA10,99611,06469 bp+–
ND4LProtein-coding gene11,06511,361297 bp+49.2%
ND4Protein-coding gene11,35512,7351,381 bp+45.3%
tRNA-HisTransfer RNA12,73612,80469 bp+–
tRNA-Ser (AGY)Transfer RNA12,80512,87369 bp+–
tRNA-Leu (CUN)Transfer RNA12,87512,94773 bp+–
ND5Protein-coding gene12,94814,7861,839 bp+44.3%
ND6Protein-coding gene14,78315,304522 bp−49.2%
tRNA-GluTransfer RNA15,30515,37369 bp−–
CYTBProtein-coding gene15,37716,5171,141 bp+47.8%
tRNA-ThrTransfer RNA16,51816,58972 bp+–
tRNA-ProTransfer RNA16,58916,65870 bp−–

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