Onychodactylus fischeri
Long-tailed clawed salamander
GC content
31.66%
Whole genome
Non-coding
1,082 bp
D-loop 790 bp
Where Long-tailed clawed salamander sits among 2,335 species
Whole-genome GC content against maximum lifespan. Long-tailed clawed salamander has the 1,092nd longest lifespan of them.
- This species
- Other amphibians
- Other classes
Base composition
Whole genome16,456 bp
- GC skew (G − C) / (G + C)
- −0.186
- AT skew (A − T) / (A + T)
- +0.015
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- Unchanged since build 1
- In the database since
- build 1 (2015-07-01)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,456 bp
Protein-coding11,353 bp
12S rRNA929 bp
16S rRNA1,578 bp
All tRNA1,520 bp
D-loop790 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 972 bp | 31.58% | −0.205 | −0.074 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,041 bp | 27.86% | −0.331 | +0.015 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 33.72% | −0.082 | −0.093 | |||||
| COX2Cytochrome c oxidase subunit II | 687 bp | 31.88% | −0.196 | +0.004 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 30.36% | −0.529 | +0.179 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 29.09% | −0.317 | −0.072 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 35.29% | −0.061 | −0.102 | |||||
| ND3NADH dehydrogenase subunit 3 | 351 bp | 28.49% | −0.180 | −0.084 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 32.32% | −0.271 | −0.075 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,378 bp | 29.83% | −0.290 | −0.016 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,815 bp | 29.09% | −0.231 | −0.016 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 32.57% | −0.388 | +0.347 | |||||
| CYTBCytochrome b | 1,138 bp | 31.99% | −0.231 | −0.059 | |||||
| 12S rRNA12S ribosomal RNA | 929 bp | 36.06% | −0.093 | +0.178 | |||||
| 16S rRNA16S ribosomal RNA | 1,578 bp | 31.43% | −0.012 | +0.187 | |||||
| D-loopControl region (D-loop) | 790 bp | 34.81% | −0.113 | −0.084 |
Codon usage
Counts per codon, darker is more frequent3,795 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.4%
UUU200
UUC44
Leu L16.3%
UUA341
UUG31
CUU99
CUC12
CUA123
CUG13
Ile I9.0%
AUU287
AUC55
Met M6.8%
AUA229
AUG29
Val V4.5%
GUU65
GUC10
GUA83
GUG12
Ser S7.5%
UCU64
UCC25
UCA145
UCG3
AGU25
AGC23
Pro P5.1%
CCU77
CCC13
CCA101
CCG4
Thr T7.0%
ACU94
ACC45
ACA123
ACG4
Ala A6.6%
GCU67
GCC53
GCA125
GCG5
Tyr Y3.4%
UAU107
UAC22
His H2.3%
CAU57
CAC32
Gln Q2.4%
CAA87
CAG5
Asn N4.2%
AAU113
AAC45
Lys K2.5%
AAA91
AAG3
Asp D1.7%
GAU40
GAC26
Glu E2.5%
GAA83
GAG11
Cys C0.8%
UGU20
UGC9
Trp W2.9%
UGA102
UGG9
Arg R1.8%
CGU12
CGC4
CGA52
CGG2
Gly G5.9%
GGU51
GGC36
GGA116
GGG21
Stop 0.3%
UAA8
UAG2
AGA0
AGG0
Genome map
38 annotated features in NC_008089.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (31.7%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 998 | 929 bp | + | 36.1% |
| tRNA-Val | Transfer RNA | 999 | 1,067 | 69 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,068 | 2,645 | 1,578 bp | + | 31.4% |
| tRNA-Leu (UUR) | Transfer RNA | 2,643 | 2,717 | 75 bp | + | – |
| ND1 | Protein-coding gene | 2,721 | 3,692 | 972 bp | + | 31.6% |
| tRNA-Ile | Transfer RNA | 3,692 | 3,762 | 71 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,761 | 3,834 | 74 bp | − | – |
| tRNA-Met | Transfer RNA | 3,835 | 3,901 | 67 bp | + | – |
| ND2 | Protein-coding gene | 3,902 | 4,942 | 1,041 bp | + | 27.9% |
| tRNA-Trp | Transfer RNA | 4,942 | 5,010 | 69 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,016 | 5,084 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,086 | 5,158 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,192 | 5,257 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,258 | 5,326 | 69 bp | − | – |
| COX1 | Protein-coding gene | 5,328 | 6,878 | 1,551 bp | + | 33.7% |
| tRNA-Ser (AGY) | Transfer RNA | 6,881 | 6,951 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 6,954 | 7,021 | 68 bp | + | – |
| COX2 | Protein-coding gene | 7,024 | 7,710 | 687 bp | + | 31.9% |
| tRNA-Lys | Transfer RNA | 7,712 | 7,782 | 71 bp | + | – |
| ATP8 | Protein-coding gene | 7,784 | 7,951 | 168 bp | + | 30.4% |
| ATP6 | Protein-coding gene | 7,942 | 8,625 | 684 bp | + | 29.1% |
| COX3 | Protein-coding gene | 8,625 | 9,409 | 785 bp | + | 35.3% |
| tRNA-Gly | Transfer RNA | 9,409 | 9,476 | 68 bp | + | – |
| ND3 | Protein-coding gene | 9,477 | 9,827 | 351 bp | + | 28.5% |
| tRNA-Arg | Transfer RNA | 9,828 | 9,892 | 65 bp | + | – |
| ND4L | Protein-coding gene | 9,895 | 10,191 | 297 bp | + | 32.3% |
| ND4 | Protein-coding gene | 10,185 | 11,562 | 1,378 bp | + | 29.8% |
| tRNA-His | Transfer RNA | 11,563 | 11,631 | 69 bp | + | – |
| tRNA-Ser (UCN) | Transfer RNA | 11,623 | 11,690 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,691 | 11,762 | 72 bp | + | – |
| ND5 | Protein-coding gene | 11,772 | 13,586 | 1,815 bp | + | 29.1% |
| ND6 | Protein-coding gene | 13,569 | 14,090 | 522 bp | − | 32.6% |
| tRNA-Glu | Transfer RNA | 14,091 | 14,158 | 68 bp | − | – |
| CYTB | Protein-coding gene | 14,162 | 15,299 | 1,138 bp | + | 32.0% |
| tRNA-Thr | Transfer RNA | 15,300 | 15,368 | 69 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,596 | 15,666 | 71 bp | − | – |
| D-loop | Control region | 15,667 | 16,456 | 790 bp | – | 34.8% |