Paramesotriton chinensis
Asian newt
GC content
38.64%
Whole genome
Non-coding
1,007 bp
Including the D-loop
Where Asian newt sits among 2,335 species
Whole-genome GC content against maximum lifespan. Asian newt has the 1,541st longest lifespan of them.
- This species
- Other amphibians
- Other classes
Base composition
Whole genome16,361 bp
- GC skew (G − C) / (G + C)
- −0.239
- AT skew (A − T) / (A + T)
- +0.077
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in captivity
- Data quality
- acceptable, tiny sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,361 bp
Protein-coding11,336 bp
12S rRNA929 bp
16S rRNA1,557 bp
All tRNA1,532 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 968 bp | 39.36% | −0.291 | +0.029 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,036 bp | 37.26% | −0.409 | +0.169 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 42.88% | −0.155 | −0.077 | |||||
| COX2Cytochrome c oxidase subunit II | 688 bp | 39.83% | −0.204 | +0.087 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 29.17% | −0.469 | +0.210 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 37.87% | −0.336 | −0.002 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 43.75% | −0.190 | −0.066 | |||||
| ND3NADH dehydrogenase subunit 3 | 346 bp | 41.04% | −0.239 | −0.069 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 40.07% | −0.261 | +0.079 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,375 bp | 38.18% | −0.337 | +0.040 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,812 bp | 35.10% | −0.324 | +0.032 | |||||
| ND6NADH dehydrogenase subunit 6 | 519 bp | 40.46% | −0.448 | +0.450 | |||||
| CYTBCytochrome b | 1,141 bp | 41.19% | −0.255 | −0.037 | |||||
| 12S rRNA12S ribosomal RNA | 929 bp | 40.69% | −0.106 | +0.263 | |||||
| 16S rRNA16S ribosomal RNA | 1,557 bp | 34.94% | −0.074 | +0.256 |
Codon usage
Counts per codon, darker is more frequent3,787 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.2%
UUU176
UUC59
Leu L15.9%
UUA152
UUG34
CUU95
CUC55
CUA218
CUG48
Ile I8.2%
AUU213
AUC99
Met M6.5%
AUA198
AUG49
Val V4.9%
GUU53
GUC30
GUA82
GUG22
Ser S7.6%
UCU48
UCC57
UCA112
UCG15
AGU16
AGC40
Pro P5.3%
CCU33
CCC40
CCA108
CCG19
Thr T7.9%
ACU57
ACC60
ACA168
ACG14
Ala A7.3%
GCU48
GCC110
GCA109
GCG9
Tyr Y2.8%
UAU62
UAC43
His H2.7%
CAU27
CAC74
Gln Q2.5%
CAA83
CAG12
Asn N3.8%
AAU59
AAC84
Lys K2.4%
AAA80
AAG10
Asp D1.7%
GAU27
GAC38
Glu E2.6%
GAA73
GAG24
Cys C0.8%
UGU13
UGC19
Trp W3.0%
UGA96
UGG17
Arg R1.9%
CGU6
CGC13
CGA42
CGG10
Gly G5.9%
GGU25
GGC57
GGA78
GGG63
Stop 0.2%
UAA4
UAG1
AGA1
AGG0
Genome map
37 annotated features in NC_035008.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (38.6%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 37 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| 12S rRNA | Ribosomal RNA | 1 | 929 | 929 bp | + | 40.7% |
| tRNA-Val | Transfer RNA | 930 | 998 | 69 bp | + | – |
| 16S rRNA | Ribosomal RNA | 999 | 2,555 | 1,557 bp | + | 34.9% |
| tRNA-Leu (UUR) | Transfer RNA | 2,556 | 2,630 | 75 bp | + | – |
| ND1 | Protein-coding gene | 2,631 | 3,598 | 968 bp | + | 39.4% |
| tRNA-Ile | Transfer RNA | 3,599 | 3,669 | 71 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,671 | 3,741 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,743 | 3,812 | 70 bp | + | – |
| ND2 | Protein-coding gene | 3,813 | 4,848 | 1,036 bp | + | 37.3% |
| tRNA-Trp | Transfer RNA | 4,849 | 4,917 | 69 bp | + | – |
| tRNA-Ala | Transfer RNA | 4,919 | 4,987 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 4,988 | 5,059 | 72 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,092 | 5,157 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,158 | 5,225 | 68 bp | − | – |
| COX1 | Protein-coding gene | 5,227 | 6,777 | 1,551 bp | + | 42.9% |
| tRNA-Ser (UCN) | Transfer RNA | 6,778 | 6,848 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 6,849 | 6,917 | 69 bp | + | – |
| COX2 | Protein-coding gene | 6,923 | 7,610 | 688 bp | + | 39.8% |
| tRNA-Lys | Transfer RNA | 7,611 | 7,683 | 73 bp | + | – |
| ATP8 | Protein-coding gene | 7,685 | 7,852 | 168 bp | + | 29.2% |
| ATP6 | Protein-coding gene | 7,843 | 8,526 | 684 bp | + | 37.9% |
| COX3 | Protein-coding gene | 8,526 | 9,309 | 784 bp | + | 43.8% |
| tRNA-Gly | Transfer RNA | 9,310 | 9,379 | 70 bp | + | – |
| ND3 | Protein-coding gene | 9,380 | 9,725 | 346 bp | + | 41.0% |
| tRNA-Arg | Transfer RNA | 9,726 | 9,793 | 68 bp | + | – |
| ND4L | Protein-coding gene | 9,794 | 10,090 | 297 bp | + | 40.1% |
| ND4 | Protein-coding gene | 10,084 | 11,458 | 1,375 bp | + | 38.2% |
| tRNA-His | Transfer RNA | 11,459 | 11,527 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,528 | 11,595 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,596 | 11,663 | 68 bp | + | – |
| ND5 | Protein-coding gene | 11,668 | 13,479 | 1,812 bp | + | 35.1% |
| ND6 | Protein-coding gene | 13,465 | 13,983 | 519 bp | − | 40.5% |
| tRNA-Glu | Transfer RNA | 13,984 | 14,051 | 68 bp | − | – |
| CYTB | Protein-coding gene | 14,053 | 15,193 | 1,141 bp | + | 41.2% |
| tRNA-Thr | Transfer RNA | 15,194 | 15,261 | 68 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,488 | 15,559 | 72 bp | − | – |
| tRNA-Phe | Transfer RNA | 16,294 | 16,361 | 68 bp | + | – |