Periparus ater
Coal tit
GC content
48.39%
Whole genome
Non-coding
1,288 bp
D-loop 1,195 bp
Where Coal tit sits among 2,335 species
Whole-genome GC content against maximum lifespan. Coal tit has the 1,630th longest lifespan of them.
- This species
- Other birds
- Other classes
Base composition
Whole genome16,783 bp
- GC skew (G − C) / (G + C)
- −0.400
- AT skew (A − T) / (A + T)
- +0.131
Life history
- Maximum lifespan
- 9.5 years
- Adult weight
- 9.2 g
- Female sexual maturity
- 365 days
- Male sexual maturity
- 365 days
- Postnatal growth rate
- 0.36 per day
Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 01112)
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- Unchanged since build 1
- In the database since
- build 1 (2015-07-01)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,783 bp
Protein-coding11,378 bp
12S rRNA979 bp
16S rRNA1,600 bp
All tRNA1,547 bp
D-loop1,195 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 978 bp | 50.10% | −0.449 | +0.066 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,040 bp | 49.62% | −0.562 | +0.160 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 50.55% | −0.337 | +0.090 | |||||
| COX2Cytochrome c oxidase subunit II | 684 bp | 49.71% | −0.400 | +0.140 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 45.24% | −0.763 | +0.109 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 51.32% | −0.544 | +0.135 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 50.77% | −0.377 | +0.026 | |||||
| ND3NADH dehydrogenase subunit 3 | 351 bp | 49.86% | −0.406 | +0.034 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 51.85% | −0.429 | +0.035 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,378 bp | 50.36% | −0.565 | +0.135 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,818 bp | 48.85% | −0.516 | +0.135 | |||||
| ND6NADH dehydrogenase subunit 6 | 519 bp | 50.29% | −0.602 | +0.581 | |||||
| CYTBCytochrome b | 1,143 bp | 48.56% | −0.477 | +0.068 | |||||
| 12S rRNA12S ribosomal RNA | 979 bp | 49.75% | −0.150 | +0.199 | |||||
| 16S rRNA16S ribosomal RNA | 1,600 bp | 45.38% | −0.129 | +0.259 | |||||
| D-loopControl region (D-loop) | 1,195 bp | 43.85% | −0.355 | −0.076 |
Codon usage
Counts per codon, darker is more frequent3,797 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F5.8%
UUU44
UUC178
Leu L17.5%
UUA22
UUG20
CUU42
CUC201
CUA326
CUG53
Ile I7.7%
AUU55
AUC237
Met M3.8%
AUA101
AUG45
Val V5.3%
GUU35
GUC72
GUA73
GUG23
Ser S7.5%
UCU31
UCC118
UCA76
UCG6
AGU3
AGC52
Pro P5.9%
CCU21
CCC118
CCA81
CCG5
Thr T8.5%
ACU27
ACC175
ACA110
ACG10
Ala A8.2%
GCU30
GCC186
GCA85
GCG9
Tyr Y2.9%
UAU14
UAC97
His H2.8%
CAU14
CAC91
Gln Q2.4%
CAA81
CAG10
Asn N3.5%
AAU14
AAC118
Lys K2.2%
AAA81
AAG4
Asp D1.8%
GAU5
GAC62
Glu E2.4%
GAA83
GAG8
Cys C0.8%
UGU6
UGC24
Trp W2.8%
UGA98
UGG9
Arg R1.9%
CGU5
CGC25
CGA37
CGG6
Gly G5.9%
GGU22
GGC85
GGA80
GGG38
Stop 0.3%
UAA5
UAG2
AGA1
AGG2
Genome map
38 annotated features in NC_026223.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (48.4%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 70 | 70 bp | + | – |
| 12S rRNA | Ribosomal RNA | 71 | 1,049 | 979 bp | + | 49.8% |
| tRNA-Val | Transfer RNA | 1,050 | 1,120 | 71 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,121 | 2,720 | 1,600 bp | + | 45.4% |
| tRNA-Leu (UUR) | Transfer RNA | 2,721 | 2,795 | 75 bp | + | – |
| ND1 | Protein-coding gene | 2,803 | 3,780 | 978 bp | + | 50.1% |
| tRNA-Ile | Transfer RNA | 3,792 | 3,863 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,868 | 3,938 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,938 | 4,006 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,009 | 5,048 | 1,040 bp | + | 49.6% |
| tRNA-Trp | Transfer RNA | 5,049 | 5,118 | 70 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,120 | 5,188 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,200 | 5,272 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,273 | 5,339 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,339 | 5,409 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,411 | 6,961 | 1,551 bp | + | 50.6% |
| tRNA-Ser (UCN) | Transfer RNA | 6,953 | 7,027 | 75 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,032 | 7,100 | 69 bp | + | – |
| COX2 | Protein-coding gene | 7,111 | 7,794 | 684 bp | + | 49.7% |
| tRNA-Lys | Transfer RNA | 7,796 | 7,866 | 71 bp | + | – |
| ATP8 | Protein-coding gene | 7,868 | 8,035 | 168 bp | + | 45.2% |
| ATP6 | Protein-coding gene | 8,026 | 8,709 | 684 bp | + | 51.3% |
| COX3 | Protein-coding gene | 8,712 | 9,495 | 784 bp | + | 50.8% |
| tRNA-Gly | Transfer RNA | 9,496 | 9,563 | 68 bp | + | – |
| ND3 | Protein-coding gene | 9,564 | 9,914 | 351 bp | + | 49.9% |
| tRNA-Arg | Transfer RNA | 9,917 | 9,986 | 70 bp | + | – |
| ND4L | Protein-coding gene | 9,988 | 10,284 | 297 bp | + | 51.9% |
| ND4 | Protein-coding gene | 10,278 | 11,655 | 1,378 bp | + | 50.4% |
| tRNA-His | Transfer RNA | 11,656 | 11,726 | 71 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,727 | 11,792 | 66 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,793 | 11,863 | 71 bp | + | – |
| ND5 | Protein-coding gene | 11,864 | 13,681 | 1,818 bp | + | 48.9% |
| CYTB | Protein-coding gene | 13,697 | 14,839 | 1,143 bp | + | 48.6% |
| tRNA-Thr | Transfer RNA | 14,843 | 14,911 | 69 bp | + | – |
| tRNA-Pro | Transfer RNA | 14,922 | 14,991 | 70 bp | − | – |
| ND6 | Protein-coding gene | 14,998 | 15,516 | 519 bp | − | 50.3% |
| tRNA-Glu | Transfer RNA | 15,518 | 15,588 | 71 bp | − | – |
| D-loop | Control region | 15,589 | 16,783 | 1,195 bp | – | 43.9% |