MitoAge

Pinicola enucleator

Pine grosbeak

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Maximum lifespan
9.8 yr
AnAge record
mtDNA size
16,818 bp
RefSeq NC_025609.1
GC content
44.68%
Whole genome
Non-coding
1,333 bp
D-loop 1,238 bp

Where Pine grosbeak sits among 2,335 species

Whole-genome GC content against maximum lifespan. Pine grosbeak has the 1,619th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Pine grosbeak
  • This species
  • Other birds
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,818 bp
GC skew (G − C) / (G + C)
−0.367
AT skew (A − T) / (A + T)
+0.125

Life history

Maximum lifespan
9.8 years
Adult weight
65.3 g
Female sexual maturity
365 days
Male sexual maturity
365 days
Gestation or incubation
13 days
Litter or clutch size
4

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 00913)

About this record

Lifespan source
AnAge build 15
Based on
an animal in the wild
Data quality
acceptable, small sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Updated in build 2
In the database since
build 1 (2015-07-01)
Last changed
build 2 (2026-11-13)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,818 bp
Protein-coding11,378 bp
12S rRNA976 bp
16S rRNA1,599 bp
All tRNA1,541 bp
D-loop1,238 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1978 bp27.9%27.7%14.0%30.4%44.38%−0.369+0.004
ND2NADH dehydrogenase subunit 21,040 bp30.6%24.3%10.2%34.9%45.10%−0.548+0.114
COX1Cytochrome c oxidase subunit I1,551 bp28.4%25.5%16.4%29.8%46.16%−0.291+0.054
COX2Cytochrome c oxidase subunit II684 bp30.8%23.1%14.9%31.1%46.05%−0.352+0.144
ATP8ATP synthase F0 subunit 8168 bp31.0%28.0%7.1%33.9%41.07%−0.652+0.051
ATP6ATP synthase F0 subunit 6684 bp32.0%24.7%9.8%33.5%43.28%−0.547+0.129
COX3Cytochrome c oxidase subunit III784 bp28.2%24.7%15.1%31.9%47.00%−0.359+0.065
ND3NADH dehydrogenase subunit 3351 bp29.9%24.8%12.8%32.5%45.30%−0.434+0.094
ND4LNADH dehydrogenase subunit 4L297 bp27.6%21.9%12.1%38.4%50.51%−0.520+0.116
ND4NADH dehydrogenase subunit 41,378 bp30.7%23.8%11.0%34.5%45.50%−0.518+0.127
ND5NADH dehydrogenase subunit 51,818 bp32.2%24.3%11.2%32.2%43.45%−0.483+0.141
ND6NADH dehydrogenase subunit 6519 bp39.3%12.1%10.0%38.2%48.36%−0.584+0.528
CYTBCytochrome b1,143 bp29.7%24.5%13.1%32.7%45.84%−0.427+0.095
12S rRNA12S ribosomal RNA976 bp30.6%21.1%21.2%27.0%48.26%−0.121+0.184
16S rRNA16S ribosomal RNA1,599 bp34.6%21.4%19.8%24.2%43.97%−0.101+0.237
D-loopControl region (D-loop)1,238 bp29.3%29.6%13.1%28.0%41.12%−0.363−0.004

Codon usage

Counts per codon, darker is more frequent

3,792 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F5.7%
UUU37
UUC178
Leu L17.5%
UUA60
UUG23
CUU72
CUC119
CUA353
CUG36
Ile I7.7%
AUU85
AUC206
Met M4.5%
AUA141
AUG29
Val V5.3%
GUU39
GUC41
GUA98
GUG23
Ser S7.9%
UCU43
UCC102
UCA88
UCG7
AGU6
AGC53
Pro P5.8%
CCU34
CCC63
CCA120
CCG4
Thr T8.1%
ACU53
ACC128
ACA121
ACG5
Ala A8.1%
GCU46
GCC153
GCA94
GCG13
Tyr Y2.9%
UAU21
UAC90
His H2.7%
CAU25
CAC78
Gln Q2.5%
CAA88
CAG6
Asn N3.6%
AAU30
AAC107
Lys K2.2%
AAA78
AAG5
Asp D1.8%
GAU18
GAC49
Glu E2.4%
GAA82
GAG10
Cys C0.7%
UGU7
UGC21
Trp W2.8%
UGA92
UGG13
Arg R1.9%
CGU10
CGC12
CGA46
CGG3
Gly G5.7%
GGU34
GGC41
GGA114
GGG29
Stop 0.3%
UAA6
UAG1
AGA2
AGG1

Genome map

38 annotated features in NC_025609.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (44.7%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
D-loopControl region11,2381,238 bp–41.1%
tRNA-PheTransfer RNA1,2391,30668 bp+–
12S rRNARibosomal RNA1,3072,282976 bp+48.3%
tRNA-ValTransfer RNA2,2832,35270 bp+–
16S rRNARibosomal RNA2,3533,9511,599 bp+44.0%
tRNA-Leu (UUR)Transfer RNA3,9524,02675 bp+–
ND1Protein-coding gene4,0415,018978 bp+44.4%
tRNA-IleTransfer RNA5,0245,09774 bp+–
tRNA-GlnTransfer RNA5,1015,17171 bp−–
tRNA-MetTransfer RNA5,1715,23969 bp+–
ND2Protein-coding gene5,2406,2791,040 bp+45.1%
tRNA-TrpTransfer RNA6,2806,34970 bp+–
tRNA-AlaTransfer RNA6,3516,41969 bp−–
tRNA-AsnTransfer RNA6,4286,50073 bp−–
tRNA-CysTransfer RNA6,5016,56767 bp−–
tRNA-TyrTransfer RNA6,5676,63771 bp−–
COX1Protein-coding gene6,6398,1891,551 bp+46.2%
tRNA-Ser (UCN)Transfer RNA8,1818,25373 bp−–
tRNA-AspTransfer RNA8,2578,32569 bp+–
COX2Protein-coding gene8,3349,017684 bp+46.1%
tRNA-LysTransfer RNA9,0199,08769 bp+–
ATP8Protein-coding gene9,0899,256168 bp+41.1%
ATP6Protein-coding gene9,2479,930684 bp+43.3%
COX3Protein-coding gene9,93910,722784 bp+47.0%
tRNA-GlyTransfer RNA10,72310,79169 bp+–
ND3Protein-coding gene10,79211,142351 bp+45.3%
tRNA-ArgTransfer RNA11,14411,21370 bp+–
ND4LProtein-coding gene11,21511,511297 bp+50.5%
ND4Protein-coding gene11,50512,8821,378 bp+45.5%
tRNA-HisTransfer RNA12,88312,95270 bp+–
tRNA-Ser (AGY)Transfer RNA12,95313,01866 bp+–
tRNA-Leu (CUN)Transfer RNA13,01813,08871 bp+–
ND5Protein-coding gene13,08914,9061,818 bp+43.5%
CYTBProtein-coding gene14,91516,0571,143 bp+45.8%
tRNA-ThrTransfer RNA16,06116,12969 bp+–
tRNA-ProTransfer RNA16,14716,21670 bp−–
ND6Protein-coding gene16,22816,746519 bp−48.4%
tRNA-GluTransfer RNA16,74816,81871 bp−–

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