Platichthys stellatus

Starry flounder

Maximum lifespan

24 yr

AnAge record

mtDNA size

17,103 bp

RefSeq NC_010966.1

GC content

46.79%

Whole genome

Non-coding

1,476 bp

D-loop 1,400 bp

Where Starry flounder sits among 2,335 species

Whole-genome GC content against maximum lifespan. Starry flounder has the 679th longest lifespan of them.

This species
Other ray-finned fishes
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome17,103 bp

GC skew (G − C) / (G + C): −0.245
AT skew (A − T) / (A + T): +0.018

Life history

Maximum lifespan: 24 years
Adult weight: 5 kg

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 04434)

About this record

Lifespan source: AnAge build 15
Based on: an animal in the wild
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Unchanged since build 1
In the database since: build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome17,103 bp

Protein-coding11,416 bp

12S rRNA949 bp

16S rRNA1,714 bp

All tRNA1,550 bp

D-loop1,400 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Platichthys stellatus genes

ND1NADH dehydrogenase subunit 1	975 bp	22.5%	28.4%	17.7%	31.4%	49.13%	−0.278	−0.117
ND2NADH dehydrogenase subunit 2	1,045 bp	23.3%	27.2%	15.3%	34.2%	49.47%	−0.381	−0.076
COX1Cytochrome c oxidase subunit I	1,560 bp	24.9%	28.9%	19.0%	27.2%	46.15%	−0.178	−0.074
COX2Cytochrome c oxidase subunit II	691 bp	27.6%	26.6%	18.2%	27.5%	45.73%	−0.203	+0.019
ATP8ATP synthase F0 subunit 8	168 bp	33.9%	25.0%	10.1%	31.0%	41.07%	−0.507	+0.152
ATP6ATP synthase F0 subunit 6	684 bp	23.1%	30.3%	14.2%	32.5%	46.64%	−0.392	−0.134
COX3Cytochrome c oxidase subunit III	786 bp	23.8%	28.2%	17.4%	30.5%	47.96%	−0.273	−0.086
ND3NADH dehydrogenase subunit 3	349 bp	20.6%	30.4%	16.0%	33.0%	49.00%	−0.345	−0.191
ND4LNADH dehydrogenase subunit 4L	297 bp	19.9%	27.6%	17.2%	35.4%	52.53%	−0.346	−0.163
ND4NADH dehydrogenase subunit 4	1,381 bp	23.9%	28.3%	17.1%	30.7%	47.79%	−0.285	−0.085
ND5NADH dehydrogenase subunit 5	1,839 bp	27.2%	26.5%	15.8%	30.4%	46.22%	−0.315	+0.013
ND6NADH dehydrogenase subunit 6	522 bp	36.8%	14.8%	15.7%	32.8%	48.47%	−0.352	+0.428
CYTBCytochrome b	1,141 bp	23.0%	29.6%	16.4%	30.9%	47.33%	−0.307	−0.125
12S rRNA12S ribosomal RNA	949 bp	31.0%	21.0%	22.1%	25.9%	48.05%	−0.079	+0.193
16S rRNA16S ribosomal RNA	1,714 bp	32.7%	21.0%	20.8%	25.4%	46.27%	−0.100	+0.218
D-loopControl region (D-loop)	1,400 bp	31.1%	26.9%	15.6%	26.4%	42.00%	−0.259	+0.074

Codon usage

Counts per codon, darker is more frequent

Gene

3,811 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.2%

UUU122

UUC116

Leu L17.1%

UUA75

UUG31

CUU169

CUC165

CUA147

CUG66

Ile I6.8%

AUU144

AUC115

Met M3.8%

AUA70

AUG76

Val V6.5%

GUU84

GUC66

GUA70

GUG28

Ser S6.5%

UCU47

UCC63

UCA64

UCG20

AGU5

AGC49

Pro P5.9%

CCU52

CCC87

CCA72

CCG15

Thr T7.6%

ACU56

ACC98

ACA120

ACG17

Ala A9.1%

GCU73

GCC134

GCA123

GCG18

Tyr Y2.9%

UAU29

UAC80

His H2.8%

CAU26

CAC80

Gln Q2.5%

CAA74

CAG21

Asn N3.0%

AAU24

AAC90

Lys K2.0%

AAA59

AAG17

Asp D2.1%

GAU18

GAC62

Glu E2.5%

GAA62

GAG34

Cys C0.6%

UGU11

UGC12

Trp W3.2%

UGA89

UGG32

Arg R2.0%

CGU11

CGC15

CGA38

CGG12

Gly G6.6%

GGU45

GGC88

GGA54

GGG63

Stop 0.2%

UAA6

UAG2

AGA0

AGG0

Genome map

38 annotated features in NC_010966.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (46.8%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Platichthys stellatus (NC_010966.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	68	68 bp	+	–
12S rRNA	Ribosomal RNA	69	1,017	949 bp	+	48.1%
tRNA-Val	Transfer RNA	1,018	1,090	73 bp	+	–
16S rRNA	Ribosomal RNA	1,091	2,804	1,714 bp	+	46.3%
tRNA-Leu (UUR)	Transfer RNA	2,805	2,878	74 bp	+	–
ND1	Protein-coding gene	2,879	3,853	975 bp	+	49.1%
tRNA-Ile	Transfer RNA	3,859	3,929	71 bp	+	–
tRNA-Gln	Transfer RNA	3,929	3,999	71 bp	−	–
tRNA-Met	Transfer RNA	3,999	4,067	69 bp	+	–
ND2	Protein-coding gene	4,068	5,112	1,045 bp	+	49.5%
tRNA-Trp	Transfer RNA	5,113	5,184	72 bp	+	–
tRNA-Ala	Transfer RNA	5,186	5,254	69 bp	−	–
tRNA-Asn	Transfer RNA	5,256	5,328	73 bp	−	–
tRNA-Cys	Transfer RNA	5,367	5,431	65 bp	+	–
tRNA-Tyr	Transfer RNA	5,432	5,499	68 bp	−	–
COX1	Protein-coding gene	5,501	7,060	1,560 bp	+	46.2%
tRNA-Ser (UCN)	Transfer RNA	7,061	7,131	71 bp	−	–
tRNA-Asp	Transfer RNA	7,146	7,216	71 bp	+	–
COX2	Protein-coding gene	7,223	7,913	691 bp	+	45.7%
tRNA-Lys	Transfer RNA	7,914	7,986	73 bp	+	–
ATP8	Protein-coding gene	7,988	8,155	168 bp	+	41.1%
ATP6	Protein-coding gene	8,146	8,829	684 bp	+	46.6%
COX3	Protein-coding gene	8,829	9,614	786 bp	+	48.0%
tRNA-Gly	Transfer RNA	9,615	9,686	72 bp	+	–
ND3	Protein-coding gene	9,686	10,034	349 bp	+	49.0%
tRNA-Arg	Transfer RNA	10,036	10,104	69 bp	+	–
ND4L	Protein-coding gene	10,104	10,400	297 bp	+	52.5%
ND4	Protein-coding gene	10,394	11,774	1,381 bp	+	47.8%
tRNA-His	Transfer RNA	11,775	11,844	70 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,845	11,911	67 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,916	11,988	73 bp	+	–
ND5	Protein-coding gene	11,989	13,827	1,839 bp	+	46.2%
ND6	Protein-coding gene	13,824	14,345	522 bp	−	48.5%
tRNA-Glu	Transfer RNA	14,346	14,414	69 bp	−	–
CYTB	Protein-coding gene	14,419	15,559	1,141 bp	+	47.3%
tRNA-Thr	Transfer RNA	15,560	15,632	73 bp	+	–
tRNA-Pro	Transfer RNA	15,633	15,703	71 bp	−	–
D-loop	Control region	15,704	17,103	1,400 bp	–	42.0%