Poecile palustris
Marsh tit
GC content
48.34%
Whole genome
Non-coding
1,333 bp
D-loop 1,240 bp
Where Marsh tit sits among 2,335 species
Whole-genome GC content against maximum lifespan. Marsh tit has the 1,336th longest lifespan of them.
- This species
- Other birds
- Other classes
Base composition
Whole genome16,824 bp
- GC skew (G − C) / (G + C)
- −0.391
- AT skew (A − T) / (A + T)
- +0.129
Life history
- Maximum lifespan
- 13.2 years
- Adult weight
- 11.2 g
- Female sexual maturity
- 365 days
- Male sexual maturity
- 365 days
- Postnatal growth rate
- 0.352 per day
Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 01119)
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, large sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- Updated in build 2
- In the database since
- build 1 (2015-07-01)
- Last changed
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,824 bp
Protein-coding11,375 bp
12S rRNA987 bp
16S rRNA1,601 bp
All tRNA1,547 bp
D-loop1,240 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 978 bp | 49.69% | −0.420 | +0.045 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,040 bp | 50.87% | −0.550 | +0.182 | |||||
| COX1Cytochrome c oxidase subunit I | 1,560 bp | 50.51% | −0.312 | +0.054 | |||||
| COX2Cytochrome c oxidase subunit II | 681 bp | 49.93% | −0.388 | +0.161 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 44.05% | −0.703 | +0.021 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 48.10% | −0.574 | +0.093 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 50.64% | −0.380 | +0.049 | |||||
| ND3NADH dehydrogenase subunit 3 | 345 bp | 50.73% | −0.451 | +0.047 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 50.51% | −0.413 | +0.020 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,378 bp | 50.15% | −0.546 | +0.100 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,818 bp | 49.23% | −0.493 | +0.146 | |||||
| ND6NADH dehydrogenase subunit 6 | 516 bp | 48.45% | −0.560 | +0.549 | |||||
| CYTBCytochrome b | 1,143 bp | 49.87% | −0.502 | +0.079 | |||||
| 12S rRNA12S ribosomal RNA | 987 bp | 49.95% | −0.144 | +0.190 | |||||
| 16S rRNA16S ribosomal RNA | 1,601 bp | 45.10% | −0.127 | +0.251 | |||||
| D-loopControl region (D-loop) | 1,240 bp | 43.66% | −0.349 | −0.026 |
Codon usage
Counts per codon, darker is more frequent3,796 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F5.8%
UUU37
UUC183
Leu L17.5%
UUA40
UUG10
CUU46
CUC193
CUA303
CUG71
Ile I7.8%
AUU56
AUC239
Met M3.8%
AUA97
AUG46
Val V5.2%
GUU32
GUC73
GUA68
GUG24
Ser S7.5%
UCU29
UCC123
UCA74
UCG6
AGU6
AGC47
Pro P6.0%
CCU29
CCC110
CCA85
CCG3
Thr T8.4%
ACU32
ACC159
ACA119
ACG8
Ala A8.5%
GCU31
GCC196
GCA84
GCG12
Tyr Y3.0%
UAU19
UAC95
His H2.7%
CAU12
CAC89
Gln Q2.4%
CAA82
CAG10
Asn N3.5%
AAU16
AAC115
Lys K2.3%
AAA82
AAG4
Asp D1.8%
GAU7
GAC62
Glu E2.4%
GAA72
GAG18
Cys C0.8%
UGU6
UGC24
Trp W2.8%
UGA99
UGG8
Arg R1.9%
CGU8
CGC21
CGA37
CGG7
Gly G5.8%
GGU22
GGC87
GGA80
GGG33
Stop 0.3%
UAA5
UAG2
AGA2
AGG1
Genome map
38 annotated features in NC_026911.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (48.3%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 70 | 70 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,056 | 987 bp | + | 50.0% |
| tRNA-Val | Transfer RNA | 1,056 | 1,125 | 70 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,126 | 2,726 | 1,601 bp | + | 45.1% |
| tRNA-Leu (UUR) | Transfer RNA | 2,727 | 2,801 | 75 bp | + | – |
| ND1 | Protein-coding gene | 2,810 | 3,787 | 978 bp | + | 49.7% |
| tRNA-Ile | Transfer RNA | 3,795 | 3,866 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,872 | 3,942 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,942 | 4,010 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,011 | 5,050 | 1,040 bp | + | 50.9% |
| tRNA-Trp | Transfer RNA | 5,051 | 5,120 | 70 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,122 | 5,190 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,202 | 5,274 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,275 | 5,341 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,342 | 5,411 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,404 | 6,963 | 1,560 bp | + | 50.5% |
| tRNA-Ser (UCN) | Transfer RNA | 6,955 | 7,029 | 75 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,034 | 7,102 | 69 bp | + | – |
| COX2 | Protein-coding gene | 7,114 | 7,794 | 681 bp | + | 49.9% |
| tRNA-Lys | Transfer RNA | 7,796 | 7,866 | 71 bp | + | – |
| ATP8 | Protein-coding gene | 7,868 | 8,035 | 168 bp | + | 44.1% |
| ATP6 | Protein-coding gene | 8,026 | 8,709 | 684 bp | + | 48.1% |
| COX3 | Protein-coding gene | 8,714 | 9,497 | 784 bp | + | 50.6% |
| tRNA-Gly | Transfer RNA | 9,498 | 9,565 | 68 bp | + | – |
| ND3 | Protein-coding gene | 9,572 | 9,916 | 345 bp | + | 50.7% |
| tRNA-Arg | Transfer RNA | 9,919 | 9,988 | 70 bp | + | – |
| ND4L | Protein-coding gene | 9,990 | 10,286 | 297 bp | + | 50.5% |
| ND4 | Protein-coding gene | 10,280 | 11,657 | 1,378 bp | + | 50.2% |
| tRNA-His | Transfer RNA | 11,658 | 11,728 | 71 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,729 | 11,794 | 66 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,796 | 11,866 | 71 bp | + | – |
| ND5 | Protein-coding gene | 11,867 | 13,684 | 1,818 bp | + | 49.2% |
| CYTB | Protein-coding gene | 13,692 | 14,834 | 1,143 bp | + | 49.9% |
| tRNA-Thr | Transfer RNA | 14,846 | 14,914 | 69 bp | + | – |
| tRNA-Pro | Transfer RNA | 14,922 | 14,991 | 70 bp | − | – |
| ND6 | Protein-coding gene | 14,996 | 15,511 | 516 bp | − | 48.5% |
| tRNA-Glu | Transfer RNA | 15,513 | 15,584 | 72 bp | − | – |
| D-loop | Control region | 15,585 | 16,824 | 1,240 bp | – | 43.7% |