Porcula salvania
Pygmy hog
GC content
38.49%
Whole genome
Non-coding
1,306 bp
D-loop 1,249 bp
Where Pygmy hog sits among 2,335 species
Whole-genome GC content against maximum lifespan. Pygmy hog has the 1,313th longest lifespan of them.
- This species
- Other mammals
- Other classes
Base composition
Whole genome16,682 bp
- GC skew (G − C) / (G + C)
- −0.345
- AT skew (A − T) / (A + T)
- +0.153
Life history
- Maximum lifespan
- 14 years
- Adult weight
- 8 kg
- Birth weight
- 191.5 g
- Female sexual maturity
- 700 days
- Male sexual maturity
- 700 days
- Gestation or incubation
- 108 days
- Litter or clutch size
- 3
Lifespan from AnAge · AnAge record · other traits from AnAge build 15 (HAGRID 02059)
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in captivity
- Data quality
- acceptable, small sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,682 bp
Protein-coding11,342 bp
12S rRNA957 bp
16S rRNA1,571 bp
All tRNA1,506 bp
D-loop1,249 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 955 bp | 41.78% | −0.459 | +0.162 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,042 bp | 34.45% | −0.554 | +0.239 | |||||
| COX1Cytochrome c oxidase subunit I | 1,545 bp | 40.78% | −0.225 | +0.021 | |||||
| COX2Cytochrome c oxidase subunit II | 688 bp | 38.37% | −0.356 | +0.151 | |||||
| ATP8ATP synthase F0 subunit 8 | 204 bp | 30.88% | −0.619 | +0.220 | |||||
| ATP6ATP synthase F0 subunit 6 | 681 bp | 36.56% | −0.502 | +0.116 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 42.09% | −0.321 | +0.040 | |||||
| ND3NADH dehydrogenase subunit 3 | 347 bp | 38.62% | −0.463 | +0.155 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 38.72% | −0.443 | +0.055 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,378 bp | 38.53% | −0.488 | +0.129 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,821 bp | 37.12% | −0.450 | +0.137 | |||||
| ND6NADH dehydrogenase subunit 6 | 528 bp | 33.90% | −0.598 | +0.387 | |||||
| CYTBCytochrome b | 1,140 bp | 40.61% | −0.408 | +0.105 | |||||
| 12S rRNA12S ribosomal RNA | 957 bp | 40.86% | −0.136 | +0.240 | |||||
| 16S rRNA16S ribosomal RNA | 1,571 bp | 35.77% | −0.103 | +0.239 | |||||
| D-loopControl region (D-loop) | 1,249 bp | 41.31% | −0.295 | +0.143 |
Codon usage
Counts per codon, darker is more frequent3,801 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F5.9%
UUU95
UUC131
Leu L15.3%
UUA124
UUG15
CUU54
CUC75
CUA302
CUG13
Ile I8.9%
AUU170
AUC167
Met M7.1%
AUA241
AUG29
Val V4.5%
GUU27
GUC19
GUA116
GUG10
Ser S7.4%
UCU30
UCC76
UCA121
UCG0
AGU12
AGC41
Pro P4.9%
CCU26
CCC65
CCA94
CCG2
Thr T8.6%
ACU51
ACC83
ACA188
ACG3
Ala A6.6%
GCU46
GCC89
GCA113
GCG4
Tyr Y3.6%
UAU56
UAC82
His H2.7%
CAU27
CAC76
Gln Q2.3%
CAA86
CAG2
Asn N4.2%
AAU47
AAC113
Lys K2.6%
AAA96
AAG3
Asp D1.7%
GAU18
GAC47
Glu E2.7%
GAA90
GAG11
Cys C0.7%
UGU7
UGC18
Trp W2.7%
UGA101
UGG3
Arg R1.7%
CGU5
CGC12
CGA48
CGG0
Gly G5.6%
GGU39
GGC47
GGA116
GGG12
Stop 0.2%
UAA6
UAG0
AGA1
AGG0
Genome map
38 annotated features in NC_043879.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (38.5%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 70 | 70 bp | + | – |
| 12S rRNA | Ribosomal RNA | 71 | 1,027 | 957 bp | + | 40.9% |
| tRNA-Val | Transfer RNA | 1,028 | 1,095 | 68 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,096 | 2,666 | 1,571 bp | + | 35.8% |
| tRNA-Leu (UUR) | Transfer RNA | 2,667 | 2,741 | 75 bp | + | – |
| ND1 | Protein-coding gene | 2,744 | 3,698 | 955 bp | + | 41.8% |
| tRNA-Ile | Transfer RNA | 3,699 | 3,767 | 69 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,765 | 3,837 | 73 bp | − | – |
| tRNA-Met | Transfer RNA | 3,839 | 3,908 | 70 bp | + | – |
| ND2 | Protein-coding gene | 3,909 | 4,950 | 1,042 bp | + | 34.5% |
| tRNA-Trp | Transfer RNA | 4,951 | 5,018 | 68 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,025 | 5,092 | 68 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,094 | 5,168 | 75 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,200 | 5,265 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,266 | 5,331 | 66 bp | − | – |
| COX1 | Protein-coding gene | 5,333 | 6,877 | 1,545 bp | + | 40.8% |
| tRNA-Ser (UCN) | Transfer RNA | 6,881 | 6,949 | 69 bp | − | – |
| tRNA-Asp | Transfer RNA | 6,957 | 7,024 | 68 bp | + | – |
| COX2 | Protein-coding gene | 7,025 | 7,712 | 688 bp | + | 38.4% |
| tRNA-Lys | Transfer RNA | 7,713 | 7,779 | 67 bp | + | – |
| ATP8 | Protein-coding gene | 7,781 | 7,984 | 204 bp | + | 30.9% |
| ATP6 | Protein-coding gene | 7,942 | 8,622 | 681 bp | + | 36.6% |
| COX3 | Protein-coding gene | 8,622 | 9,405 | 784 bp | + | 42.1% |
| tRNA-Gly | Transfer RNA | 9,406 | 9,474 | 69 bp | + | – |
| ND3 | Protein-coding gene | 9,475 | 9,821 | 347 bp | + | 38.6% |
| tRNA-Arg | Transfer RNA | 9,822 | 9,890 | 69 bp | + | – |
| ND4L | Protein-coding gene | 9,891 | 10,187 | 297 bp | + | 38.7% |
| ND4 | Protein-coding gene | 10,181 | 11,558 | 1,378 bp | + | 38.5% |
| tRNA-His | Transfer RNA | 11,559 | 11,627 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,628 | 11,686 | 59 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,687 | 11,756 | 70 bp | + | – |
| ND5 | Protein-coding gene | 11,757 | 13,577 | 1,821 bp | + | 37.1% |
| ND6 | Protein-coding gene | 13,561 | 14,088 | 528 bp | − | 33.9% |
| tRNA-Glu | Transfer RNA | 14,089 | 14,157 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,162 | 15,301 | 1,140 bp | + | 40.6% |
| tRNA-Thr | Transfer RNA | 15,302 | 15,369 | 68 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,369 | 15,433 | 65 bp | − | – |
| D-loop | Control region | 15,434 | 16,682 | 1,249 bp | – | 41.3% |