MitoAge

Potamochoerus porcus

Red river hog

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Maximum lifespan
22 yr
AnAge record
mtDNA size
16,693 bp
RefSeq NC_020737.1
GC content
39.45%
Whole genome
Non-coding
1,320 bp
D-loop 1,254 bp

Where Red river hog sits among 2,335 species

Whole-genome GC content against maximum lifespan. Red river hog has the 793rd longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Red river hog
  • This species
  • Other mammals
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,693 bp
GC skew (G − C) / (G + C)
−0.280
AT skew (A − T) / (A + T)
+0.114

Life history

Maximum lifespan
22 years
Adult weight
88 kg
Birth weight
775 g
Female sexual maturity
3 years
Male sexual maturity
3 years
Gestation or incubation
122 days
Litter or clutch size
3
Postnatal growth rate
0.0099 per day

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 02057)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
high, large sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Updated in build 2
In the database since
build 1 (2015-07-01)
Last changed
build 2 (2026-11-13)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,693 bp
Protein-coding11,342 bp
12S rRNA962 bp
16S rRNA1,573 bp
All tRNA1,499 bp
D-loop1,254 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1955 bp32.8%27.0%12.5%27.7%40.21%−0.380+0.096
ND2NADH dehydrogenase subunit 21,042 bp38.1%25.7%10.0%26.2%36.18%−0.448+0.194
COX1Cytochrome c oxidase subunit I1,545 bp28.3%30.5%18.0%23.2%41.23%−0.127−0.037
COX2Cytochrome c oxidase subunit II688 bp33.9%26.7%14.1%25.3%39.39%−0.284+0.118
ATP8ATP synthase F0 subunit 8204 bp40.2%29.4%8.8%21.6%30.39%−0.419+0.155
ATP6ATP synthase F0 subunit 6681 bp32.0%27.3%11.5%29.2%40.68%−0.437+0.079
COX3Cytochrome c oxidase subunit III784 bp28.8%27.8%15.8%27.6%43.37%−0.271+0.018
ND3NADH dehydrogenase subunit 3347 bp32.9%26.8%13.5%26.8%40.35%−0.329+0.101
ND4LNADH dehydrogenase subunit 4L297 bp29.6%32.3%13.1%24.9%38.05%−0.310−0.043
ND4NADH dehydrogenase subunit 41,378 bp32.9%27.5%11.2%28.4%39.62%−0.432+0.089
ND5NADH dehydrogenase subunit 51,821 bp34.1%28.0%11.6%26.4%37.95%−0.389+0.099
ND6NADH dehydrogenase subunit 6528 bp43.0%20.1%8.9%28.0%36.93%−0.518+0.363
CYTBCytochrome b1,140 bp30.7%27.2%14.1%28.0%42.11%−0.329+0.061
12S rRNA12S ribosomal RNA962 bp35.6%23.1%18.8%22.6%41.37%−0.090+0.213
16S rRNA16S ribosomal RNA1,573 bp38.9%24.5%16.4%20.2%36.62%−0.104+0.228
D-loopControl region (D-loop)1,254 bp31.2%26.3%16.7%25.8%42.50%−0.212+0.085

Codon usage

Counts per codon, darker is more frequent

3,801 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F5.9%
UUU95
UUC130
Leu L15.4%
UUA110
UUG25
CUU68
CUC62
CUA273
CUG49
Ile I8.5%
AUU179
AUC145
Met M6.9%
AUA208
AUG54
Val V5.1%
GUU30
GUC27
GUA116
GUG21
Ser S7.4%
UCU51
UCC58
UCA105
UCG11
AGU11
AGC47
Pro P5.0%
CCU34
CCC58
CCA95
CCG4
Thr T8.2%
ACU55
ACC74
ACA171
ACG13
Ala A6.7%
GCU46
GCC90
GCA108
GCG11
Tyr Y3.7%
UAU65
UAC74
His H2.7%
CAU32
CAC69
Gln Q2.3%
CAA77
CAG10
Asn N4.0%
AAU54
AAC99
Lys K2.6%
AAA81
AAG17
Asp D1.9%
GAU28
GAC43
Glu E2.6%
GAA83
GAG17
Cys C0.7%
UGU7
UGC20
Trp W2.7%
UGA91
UGG13
Arg R1.7%
CGU5
CGC11
CGA48
CGG2
Gly G5.6%
GGU40
GGC46
GGA101
GGG27
Stop 0.2%
UAA5
UAG1
AGA1
AGG0

Genome map

38 annotated features in NC_020737.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (39.5%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA17070 bp+–
12S rRNARibosomal RNA701,031962 bp+41.4%
tRNA-ValTransfer RNA1,0311,09868 bp+–
16S rRNARibosomal RNA1,0992,6711,573 bp+36.6%
tRNA-Leu (UUR)Transfer RNA2,6712,74575 bp+–
ND1Protein-coding gene2,7483,702955 bp+40.2%
tRNA-IleTransfer RNA3,7033,77169 bp+–
tRNA-GlnTransfer RNA3,7693,84173 bp−–
tRNA-MetTransfer RNA3,8433,90361 bp+–
ND2Protein-coding gene3,9134,9541,042 bp+36.2%
tRNA-TrpTransfer RNA4,9555,02268 bp+–
tRNA-AlaTransfer RNA5,0295,09668 bp−–
tRNA-AsnTransfer RNA5,0985,17275 bp−–
tRNA-CysTransfer RNA5,2055,27268 bp−–
tRNA-TyrTransfer RNA5,2725,33766 bp−–
COX1Protein-coding gene5,3396,8831,545 bp+41.2%
tRNA-Ser (UCN)Transfer RNA6,8876,95569 bp−–
tRNA-AspTransfer RNA6,9637,03068 bp+–
COX2Protein-coding gene7,0317,718688 bp+39.4%
tRNA-LysTransfer RNA7,7197,78567 bp+–
ATP8Protein-coding gene7,7877,990204 bp+30.4%
ATP6Protein-coding gene7,9488,628681 bp+40.7%
COX3Protein-coding gene8,6289,411784 bp+43.4%
tRNA-GlyTransfer RNA9,4129,48069 bp+–
ND3Protein-coding gene9,4819,827347 bp+40.4%
tRNA-ArgTransfer RNA9,8289,89669 bp+–
ND4LProtein-coding gene9,89710,193297 bp+38.1%
ND4Protein-coding gene10,18711,5641,378 bp+39.6%
tRNA-HisTransfer RNA11,56511,63369 bp+–
tRNA-Ser (AGY)Transfer RNA11,63411,69259 bp+–
tRNA-Leu (CUN)Transfer RNA11,69311,76270 bp+–
ND5Protein-coding gene11,76313,5831,821 bp+38.0%
ND6Protein-coding gene13,56714,094528 bp−36.9%
tRNA-GluTransfer RNA14,09514,16470 bp−–
CYTBProtein-coding gene14,16815,3071,140 bp+42.1%
tRNA-ThrTransfer RNA15,30815,37568 bp+–
tRNA-ProTransfer RNA15,37515,43965 bp−–
D-loopControl region15,44016,6931,254 bp–42.5%

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