MitoAge

Proteus anguinus

Olm

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Maximum lifespan
102 yr
AnAge record
mtDNA size
16,584 bp
RefSeq NC_023342.1
GC content
41.83%
Whole genome
Non-coding
1,280 bp
D-loop 960 bp

Where Olm sits among 2,335 species

Whole-genome GC content against maximum lifespan. Olm has the 26th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Olm
  • This species
  • Other amphibians
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,584 bp
GC skew (G − C) / (G + C)
−0.282
AT skew (A − T) / (A + T)
+0.064

Life history

Maximum lifespan
102 years
Adult weight
17 g
Female sexual maturity
11.3 years
Gestation or incubation
133 days
Litter or clutch size
35

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 00183)

About this record

Lifespan source
AnAge build 15
Based on
an animal in the wild
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,584 bp
Protein-coding11,327 bp
12S rRNA911 bp
16S rRNA1,544 bp
All tRNA1,525 bp
D-loop960 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1967 bp30.9%29.6%12.3%27.2%39.50%−0.377+0.022
ND2NADH dehydrogenase subunit 21,039 bp32.0%27.2%10.9%29.9%40.81%−0.467+0.080
COX1Cytochrome c oxidase subunit I1,551 bp25.3%28.7%18.3%27.7%46.04%−0.204−0.063
COX2Cytochrome c oxidase subunit II688 bp30.1%28.1%15.8%26.0%41.86%−0.243+0.035
ATP8ATP synthase F0 subunit 8168 bp37.5%29.2%6.5%26.8%33.33%−0.607+0.125
ATP6ATP synthase F0 subunit 6684 bp28.8%28.8%12.9%29.5%42.40%−0.3930.000
COX3Cytochrome c oxidase subunit III784 bp27.2%27.0%16.2%29.6%45.79%−0.292+0.002
ND3NADH dehydrogenase subunit 3344 bp25.9%30.5%16.3%27.3%43.61%−0.253−0.082
ND4LNADH dehydrogenase subunit 4L297 bp26.3%28.3%15.2%30.3%45.46%−0.333−0.037
ND4NADH dehydrogenase subunit 41,369 bp28.3%28.1%14.6%29.0%43.61%−0.330+0.003
ND5NADH dehydrogenase subunit 51,827 bp32.0%27.6%12.7%27.8%40.45%−0.372+0.074
ND6NADH dehydrogenase subunit 6510 bp41.6%16.9%12.0%29.6%41.57%−0.425+0.423
CYTBCytochrome b1,141 bp27.8%28.8%15.0%28.4%43.38%−0.309−0.019
12S rRNA12S ribosomal RNA911 bp33.9%22.2%18.9%25.0%43.91%−0.140+0.209
16S rRNA16S ribosomal RNA1,544 bp39.4%24.3%17.2%19.0%36.27%−0.050+0.238
D-loopControl region (D-loop)960 bp32.9%30.3%13.9%22.9%36.77%−0.246+0.041

Codon usage

Counts per codon, darker is more frequent

3,787 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.1%
UUU137
UUC94
Leu L16.1%
UUA112
UUG27
CUU112
CUC96
CUA205
CUG57
Ile I7.8%
AUU155
AUC140
Met M6.3%
AUA188
AUG50
Val V5.4%
GUU56
GUC44
GUA82
GUG21
Ser S6.9%
UCU52
UCC80
UCA74
UCG7
AGU11
AGC39
Pro P5.5%
CCU24
CCC46
CCA123
CCG15
Thr T7.9%
ACU56
ACC116
ACA112
ACG14
Ala A8.1%
GCU63
GCC137
GCA95
GCG12
Tyr Y2.8%
UAU51
UAC56
His H2.7%
CAU24
CAC80
Gln Q2.5%
CAA82
CAG14
Asn N3.6%
AAU61
AAC77
Lys K2.4%
AAA82
AAG10
Asp D1.8%
GAU25
GAC44
Glu E2.4%
GAA73
GAG19
Cys C0.7%
UGU9
UGC17
Trp W2.9%
UGA84
UGG26
Arg R1.9%
CGU5
CGC16
CGA38
CGG12
Gly G5.9%
GGU29
GGC78
GGA73
GGG44
Stop 0.2%
UAA5
UAG0
AGA0
AGG1

Genome map

38 annotated features in NC_023342.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (41.8%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA16868 bp+–
12S rRNARibosomal RNA69979911 bp+43.9%
tRNA-ValTransfer RNA9831,05169 bp+–
16S rRNARibosomal RNA1,0522,5951,544 bp+36.3%
tRNA-Leu (UUR)Transfer RNA2,5962,67075 bp+–
ND1Protein-coding gene2,6713,637967 bp+39.5%
tRNA-IleTransfer RNA3,6383,71174 bp+–
tRNA-GlnTransfer RNA3,7083,77871 bp−–
tRNA-MetTransfer RNA3,7783,84669 bp+–
ND2Protein-coding gene3,8474,8851,039 bp+40.8%
tRNA-TrpTransfer RNA4,8864,95368 bp+–
tRNA-AlaTransfer RNA4,9555,02167 bp−–
tRNA-AsnTransfer RNA5,0215,09272 bp−–
tRNA-CysTransfer RNA5,1265,19166 bp−–
tRNA-TyrTransfer RNA5,1925,25968 bp−–
COX1Protein-coding gene5,2616,8111,551 bp+46.0%
tRNA-Ser (UCN)Transfer RNA6,8096,87870 bp−–
tRNA-AspTransfer RNA6,8806,94869 bp+–
COX2Protein-coding gene6,9507,637688 bp+41.9%
tRNA-LysTransfer RNA7,6387,71174 bp+–
ATP8Protein-coding gene7,7137,880168 bp+33.3%
ATP6Protein-coding gene7,8718,554684 bp+42.4%
COX3Protein-coding gene8,5549,337784 bp+45.8%
tRNA-GlyTransfer RNA9,3389,40770 bp+–
ND3Protein-coding gene9,4089,751344 bp+43.6%
tRNA-ArgTransfer RNA9,7529,81867 bp+–
ND4LProtein-coding gene9,82010,116297 bp+45.5%
ND4Protein-coding gene10,11011,4781,369 bp+43.6%
tRNA-HisTransfer RNA11,47911,54769 bp+–
tRNA-Ser (AGY)Transfer RNA11,54811,61568 bp+–
tRNA-Leu (CUN)Transfer RNA11,61611,68570 bp+–
ND5Protein-coding gene11,68713,5131,827 bp+40.5%
ND6Protein-coding gene13,49013,999510 bp−41.6%
tRNA-GluTransfer RNA14,00014,06768 bp−–
CYTBProtein-coding gene14,06915,2091,141 bp+43.4%
tRNA-ThrTransfer RNA15,21015,27970 bp+–
tRNA-ProTransfer RNA15,55615,62469 bp−–
D-loopControl region15,62516,584960 bp–36.8%

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