Prunella collaris
Alpine accentor
GC content
46.35%
Whole genome
Non-coding
1,375 bp
Including the D-loop
Where Alpine accentor sits among 2,335 species
Whole-genome GC content against maximum lifespan. Alpine accentor has the 1,794th longest lifespan of them.
- This species
- Other birds
- Other classes
Base composition
Whole genome16,855 bp
- GC skew (G − C) / (G + C)
- −0.365
- AT skew (A − T) / (A + T)
- +0.133
Life history
- Maximum lifespan
- 7.7 years
- Adult weight
- 39.8 g
Lifespan from AnAge · AnAge record · other traits from AnAge build 15 (HAGRID 01235)
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- questionable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,855 bp
Protein-coding11,378 bp
12S rRNA976 bp
16S rRNA1,595 bp
All tRNA1,542 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 978 bp | 47.85% | −0.346 | +0.008 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,040 bp | 44.76% | −0.501 | +0.125 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 47.45% | −0.288 | +0.065 | |||||
| COX2Cytochrome c oxidase subunit II | 684 bp | 47.52% | −0.342 | +0.159 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 43.45% | −0.753 | +0.158 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 46.64% | −0.549 | +0.129 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 49.24% | −0.347 | +0.075 | |||||
| ND3NADH dehydrogenase subunit 3 | 351 bp | 45.58% | −0.413 | +0.016 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 47.48% | −0.475 | +0.013 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,378 bp | 46.15% | −0.528 | +0.156 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,818 bp | 46.43% | −0.472 | +0.148 | |||||
| ND6NADH dehydrogenase subunit 6 | 519 bp | 50.87% | −0.561 | +0.529 | |||||
| CYTBCytochrome b | 1,143 bp | 48.64% | −0.442 | +0.118 | |||||
| 12S rRNA12S ribosomal RNA | 976 bp | 48.26% | −0.113 | +0.172 | |||||
| 16S rRNA16S ribosomal RNA | 1,595 bp | 43.39% | −0.104 | +0.229 |
Codon usage
Counts per codon, darker is more frequent3,796 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F5.8%
UUU43
UUC178
Leu L17.5%
UUA47
UUG9
CUU51
CUC138
CUA348
CUG73
Ile I7.6%
AUU74
AUC215
Met M4.2%
AUA114
AUG44
Val V5.3%
GUU33
GUC52
GUA85
GUG30
Ser S7.5%
UCU29
UCC93
UCA93
UCG10
AGU15
AGC45
Pro P5.8%
CCU35
CCC72
CCA108
CCG5
Thr T8.5%
ACU49
ACC135
ACA133
ACG7
Ala A8.2%
GCU50
GCC157
GCA95
GCG8
Tyr Y3.0%
UAU21
UAC92
His H2.6%
CAU15
CAC85
Gln Q2.6%
CAA88
CAG11
Asn N3.5%
AAU15
AAC117
Lys K2.2%
AAA74
AAG10
Asp D1.8%
GAU16
GAC52
Glu E2.4%
GAA71
GAG19
Cys C0.8%
UGU8
UGC21
Trp W2.8%
UGA91
UGG15
Arg R1.8%
CGU7
CGC10
CGA46
CGG6
Gly G5.9%
GGU17
GGC71
GGA106
GGG29
Stop 0.3%
UAA4
UAG3
AGA2
AGG1
Genome map
37 annotated features in NC_082321.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (46.4%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 37 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,044 | 976 bp | + | 48.3% |
| tRNA-Val | Transfer RNA | 1,044 | 1,113 | 70 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,114 | 2,708 | 1,595 bp | + | 43.4% |
| tRNA-Leu (UUR) | Transfer RNA | 2,709 | 2,783 | 75 bp | + | – |
| ND1 | Protein-coding gene | 2,807 | 3,784 | 978 bp | + | 47.9% |
| tRNA-Ile | Transfer RNA | 3,795 | 3,866 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,872 | 3,942 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,942 | 4,010 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,011 | 5,050 | 1,040 bp | + | 44.8% |
| tRNA-Trp | Transfer RNA | 5,051 | 5,120 | 70 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,122 | 5,190 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,201 | 5,273 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,274 | 5,340 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,341 | 5,410 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,412 | 6,962 | 1,551 bp | + | 47.5% |
| tRNA-Ser (UCN) | Transfer RNA | 6,954 | 7,026 | 73 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,032 | 7,100 | 69 bp | + | – |
| COX2 | Protein-coding gene | 7,111 | 7,794 | 684 bp | + | 47.5% |
| tRNA-Lys | Transfer RNA | 7,796 | 7,865 | 70 bp | + | – |
| ATP8 | Protein-coding gene | 7,867 | 8,034 | 168 bp | + | 43.5% |
| ATP6 | Protein-coding gene | 8,025 | 8,708 | 684 bp | + | 46.6% |
| COX3 | Protein-coding gene | 8,717 | 9,500 | 784 bp | + | 49.2% |
| tRNA-Gly | Transfer RNA | 9,501 | 9,569 | 69 bp | + | – |
| ND3 | Protein-coding gene | 9,570 | 9,920 | 351 bp | + | 45.6% |
| tRNA-Arg | Transfer RNA | 9,922 | 9,991 | 70 bp | + | – |
| ND4L | Protein-coding gene | 9,993 | 10,289 | 297 bp | + | 47.5% |
| ND4 | Protein-coding gene | 10,283 | 11,660 | 1,378 bp | + | 46.2% |
| tRNA-His | Transfer RNA | 11,661 | 11,730 | 70 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,731 | 11,796 | 66 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,796 | 11,866 | 71 bp | + | – |
| ND5 | Protein-coding gene | 11,867 | 13,684 | 1,818 bp | + | 46.4% |
| CYTB | Protein-coding gene | 13,693 | 14,835 | 1,143 bp | + | 48.6% |
| tRNA-Thr | Transfer RNA | 14,839 | 14,907 | 69 bp | + | – |
| tRNA-Pro | Transfer RNA | 14,923 | 14,992 | 70 bp | − | – |
| ND6 | Protein-coding gene | 15,002 | 15,520 | 519 bp | − | 50.9% |
| tRNA-Glu | Transfer RNA | 15,522 | 15,593 | 72 bp | − | – |