Pseudopleuronectes herzensteini
Yellow striped flounder
GC content
46.91%
Whole genome
Non-coding
1,090 bp
D-loop 1,016 bp
Where Yellow striped flounder sits among 2,335 species
Whole-genome GC content against maximum lifespan. Yellow striped flounder has the 1,244th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,719 bp
- GC skew (G − C) / (G + C)
- −0.246
- AT skew (A − T) / (A + T)
- +0.015
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an animal in the wild
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,719 bp
Protein-coding11,415 bp
12S rRNA949 bp
16S rRNA1,716 bp
All tRNA1,549 bp
D-loop1,016 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 48.31% | −0.291 | −0.111 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 50.43% | −0.408 | −0.035 | |||||
| COX1Cytochrome c oxidase subunit I | 1,560 bp | 47.56% | −0.175 | −0.088 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 45.15% | −0.205 | +0.008 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 41.67% | −0.486 | +0.122 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 47.22% | −0.375 | −0.152 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 48.79% | −0.285 | −0.055 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 48.14% | −0.345 | −0.182 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 51.18% | −0.382 | −0.172 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 46.34% | −0.278 | −0.053 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 46.55% | −0.313 | +0.007 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 48.08% | −0.371 | +0.439 | |||||
| CYTBCytochrome b | 1,141 bp | 48.20% | −0.305 | −0.151 | |||||
| 12S rRNA12S ribosomal RNA | 949 bp | 48.16% | −0.077 | +0.199 | |||||
| 16S rRNA16S ribosomal RNA | 1,716 bp | 46.04% | −0.106 | +0.214 | |||||
| D-loopControl region (D-loop) | 1,016 bp | 41.04% | −0.209 | +0.025 |
Codon usage
Counts per codon, darker is more frequent3,810 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.2%
UUU125
UUC112
Leu L17.1%
UUA68
UUG30
CUU162
CUC171
CUA149
CUG70
Ile I6.9%
AUU152
AUC112
Met M3.8%
AUA73
AUG73
Val V6.5%
GUU70
GUC78
GUA64
GUG34
Ser S6.5%
UCU57
UCC58
UCA54
UCG24
AGU7
AGC48
Pro P6.0%
CCU51
CCC92
CCA63
CCG21
Thr T7.7%
ACU51
ACC102
ACA119
ACG20
Ala A9.2%
GCU62
GCC149
GCA118
GCG20
Tyr Y2.9%
UAU34
UAC76
His H2.7%
CAU22
CAC81
Gln Q2.5%
CAA78
CAG16
Asn N3.0%
AAU31
AAC83
Lys K2.0%
AAA62
AAG14
Asp D2.1%
GAU17
GAC63
Glu E2.5%
GAA71
GAG25
Cys C0.6%
UGU10
UGC13
Trp W3.2%
UGA95
UGG27
Arg R2.0%
CGU12
CGC13
CGA40
CGG12
Gly G6.5%
GGU47
GGC81
GGA56
GGG65
Stop 0.2%
UAA5
UAG2
AGA0
AGG0
Genome map
38 annotated features in NC_063673.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (46.9%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,017 | 949 bp | + | 48.2% |
| tRNA-Val | Transfer RNA | 1,018 | 1,090 | 73 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,091 | 2,806 | 1,716 bp | + | 46.0% |
| tRNA-Leu (UUR) | Transfer RNA | 2,807 | 2,880 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,881 | 3,855 | 975 bp | + | 48.3% |
| tRNA-Ile | Transfer RNA | 3,861 | 3,931 | 71 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,931 | 4,001 | 71 bp | + | – |
| tRNA-Met | Transfer RNA | 4,001 | 4,069 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,070 | 5,114 | 1,045 bp | + | 50.4% |
| tRNA-Trp | Transfer RNA | 5,115 | 5,186 | 72 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,188 | 5,256 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,258 | 5,330 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,368 | 5,432 | 65 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,433 | 5,500 | 68 bp | − | – |
| COX1 | Protein-coding gene | 5,502 | 7,061 | 1,560 bp | + | 47.6% |
| tRNA-Ser (UCN) | Transfer RNA | 7,062 | 7,132 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,147 | 7,217 | 71 bp | + | – |
| COX2 | Protein-coding gene | 7,224 | 7,914 | 691 bp | + | 45.2% |
| tRNA-Lys | Transfer RNA | 7,915 | 7,987 | 73 bp | + | – |
| ATP8 | Protein-coding gene | 7,989 | 8,156 | 168 bp | + | 41.7% |
| ATP6 | Protein-coding gene | 8,147 | 8,830 | 684 bp | + | 47.2% |
| COX3 | Protein-coding gene | 8,830 | 9,614 | 785 bp | + | 48.8% |
| tRNA-Gly | Transfer RNA | 9,615 | 9,686 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,687 | 10,035 | 349 bp | + | 48.1% |
| tRNA-Arg | Transfer RNA | 10,036 | 10,104 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,105 | 10,401 | 297 bp | + | 51.2% |
| ND4 | Protein-coding gene | 10,395 | 11,775 | 1,381 bp | + | 46.3% |
| tRNA-His | Transfer RNA | 11,776 | 11,845 | 70 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,846 | 11,912 | 67 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,917 | 11,989 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,990 | 13,828 | 1,839 bp | + | 46.6% |
| ND6 | Protein-coding gene | 13,825 | 14,346 | 522 bp | − | 48.1% |
| tRNA-Glu | Transfer RNA | 14,347 | 14,415 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,420 | 15,560 | 1,141 bp | + | 48.2% |
| tRNA-Thr | Transfer RNA | 15,561 | 15,633 | 73 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,633 | 15,703 | 71 bp | − | – |
| D-loop | Control region | 15,704 | 16,719 | 1,016 bp | – | 41.0% |