Pseudopleuronectes yokohamae
Marbled flounder
GC content
46.01%
Whole genome
Non-coding
1,754 bp
D-loop 1,679 bp
Where Marbled flounder sits among 2,335 species
Whole-genome GC content against maximum lifespan. Marbled flounder has the 1,602nd longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome17,383 bp
- GC skew (G − C) / (G + C)
- −0.250
- AT skew (A − T) / (A + T)
- +0.020
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an observed animal, origin not stated
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome17,383 bp
Protein-coding11,415 bp
12S rRNA949 bp
16S rRNA1,716 bp
All tRNA1,549 bp
D-loop1,679 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 47.39% | −0.286 | −0.115 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 49.47% | −0.400 | −0.038 | |||||
| COX1Cytochrome c oxidase subunit I | 1,560 bp | 46.03% | −0.164 | −0.083 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 45.30% | −0.208 | +0.011 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 40.48% | −0.500 | +0.120 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 45.61% | −0.378 | −0.145 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 48.79% | −0.290 | −0.040 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 48.14% | −0.333 | −0.182 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 52.53% | −0.385 | −0.149 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 46.27% | −0.299 | −0.038 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 45.57% | −0.341 | +0.021 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 48.47% | −0.360 | +0.420 | |||||
| CYTBCytochrome b | 1,141 bp | 46.80% | −0.292 | −0.147 | |||||
| 12S rRNA12S ribosomal RNA | 949 bp | 48.47% | −0.078 | +0.202 | |||||
| 16S rRNA16S ribosomal RNA | 1,716 bp | 46.15% | −0.109 | +0.219 | |||||
| D-loopControl region (D-loop) | 1,679 bp | 38.77% | −0.247 | +0.035 |
Codon usage
Counts per codon, darker is more frequent3,810 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.2%
UUU128
UUC109
Leu L17.1%
UUA66
UUG26
CUU161
CUC167
CUA157
CUG74
Ile I7.0%
AUU159
AUC107
Met M3.9%
AUA73
AUG74
Val V6.3%
GUU76
GUC67
GUA68
GUG29
Ser S6.5%
UCU52
UCC58
UCA63
UCG21
AGU8
AGC47
Pro P6.0%
CCU53
CCC89
CCA64
CCG21
Thr T7.7%
ACU57
ACC94
ACA124
ACG18
Ala A9.2%
GCU70
GCC138
GCA131
GCG10
Tyr Y2.9%
UAU36
UAC74
His H2.7%
CAU22
CAC81
Gln Q2.5%
CAA79
CAG15
Asn N3.0%
AAU33
AAC81
Lys K2.0%
AAA63
AAG13
Asp D2.1%
GAU13
GAC67
Glu E2.5%
GAA75
GAG21
Cys C0.6%
UGU9
UGC14
Trp W3.2%
UGA97
UGG25
Arg R2.0%
CGU12
CGC12
CGA40
CGG13
Gly G6.5%
GGU50
GGC74
GGA68
GGG57
Stop 0.2%
UAA5
UAG2
AGA0
AGG0
Genome map
38 annotated features in NC_028014.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (46.0%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,017 | 949 bp | + | 48.5% |
| tRNA-Val | Transfer RNA | 1,018 | 1,090 | 73 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,091 | 2,806 | 1,716 bp | + | 46.2% |
| tRNA-Leu (UUR) | Transfer RNA | 2,807 | 2,880 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,881 | 3,855 | 975 bp | + | 47.4% |
| tRNA-Ile | Transfer RNA | 3,861 | 3,931 | 71 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,931 | 4,001 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 4,001 | 4,069 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,070 | 5,114 | 1,045 bp | + | 49.5% |
| tRNA-Trp | Transfer RNA | 5,115 | 5,186 | 72 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,188 | 5,256 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,258 | 5,330 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,369 | 5,433 | 65 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,434 | 5,501 | 68 bp | − | – |
| COX1 | Protein-coding gene | 5,503 | 7,062 | 1,560 bp | + | 46.0% |
| tRNA-Ser (UCN) | Transfer RNA | 7,063 | 7,133 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,148 | 7,218 | 71 bp | + | – |
| COX2 | Protein-coding gene | 7,225 | 7,915 | 691 bp | + | 45.3% |
| tRNA-Lys | Transfer RNA | 7,916 | 7,988 | 73 bp | + | – |
| ATP8 | Protein-coding gene | 7,990 | 8,157 | 168 bp | + | 40.5% |
| ATP6 | Protein-coding gene | 8,148 | 8,831 | 684 bp | + | 45.6% |
| COX3 | Protein-coding gene | 8,831 | 9,615 | 785 bp | + | 48.8% |
| tRNA-Gly | Transfer RNA | 9,616 | 9,687 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,688 | 10,036 | 349 bp | + | 48.1% |
| tRNA-Arg | Transfer RNA | 10,037 | 10,105 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,106 | 10,402 | 297 bp | + | 52.5% |
| ND4 | Protein-coding gene | 10,396 | 11,776 | 1,381 bp | + | 46.3% |
| tRNA-His | Transfer RNA | 11,777 | 11,846 | 70 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,847 | 11,913 | 67 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,918 | 11,990 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,991 | 13,829 | 1,839 bp | + | 45.6% |
| ND6 | Protein-coding gene | 13,826 | 14,347 | 522 bp | − | 48.5% |
| tRNA-Glu | Transfer RNA | 14,348 | 14,416 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,421 | 15,561 | 1,141 bp | + | 46.8% |
| tRNA-Thr | Transfer RNA | 15,562 | 15,634 | 73 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,634 | 15,704 | 71 bp | − | – |
| D-loop | Control region | 15,705 | 17,383 | 1,679 bp | – | 38.8% |