Pseudorhombus pentophthalmus
Fivespot flounder
GC content
47.23%
Whole genome
Non-coding
1,066 bp
D-loop 993 bp
Where Fivespot flounder sits among 2,335 species
Whole-genome GC content against maximum lifespan. Fivespot flounder has the 2,214th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,684 bp
- GC skew (G − C) / (G + C)
- −0.239
- AT skew (A − T) / (A + T)
- +0.006
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,684 bp
Protein-coding11,399 bp
12S rRNA942 bp
16S rRNA1,727 bp
All tRNA1,550 bp
D-loop993 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 50.26% | −0.298 | −0.101 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 50.05% | −0.365 | −0.050 | |||||
| COX1Cytochrome c oxidase subunit I | 1,545 bp | 48.16% | −0.156 | −0.121 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 45.30% | −0.252 | +0.005 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 44.05% | −0.486 | +0.085 | |||||
| ATP6ATP synthase F0 subunit 6 | 683 bp | 45.97% | −0.395 | −0.122 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 48.66% | −0.293 | −0.067 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 51.00% | −0.337 | −0.205 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 52.86% | −0.363 | −0.129 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 49.31% | −0.313 | −0.037 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 47.31% | −0.315 | −0.032 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 51.15% | −0.243 | +0.357 | |||||
| CYTBCytochrome b | 1,140 bp | 46.14% | −0.281 | −0.134 | |||||
| 12S rRNA12S ribosomal RNA | 942 bp | 47.56% | −0.085 | +0.219 | |||||
| 16S rRNA16S ribosomal RNA | 1,727 bp | 46.84% | −0.078 | +0.190 | |||||
| D-loopControl region (D-loop) | 993 bp | 37.56% | −0.174 | +0.058 |
Codon usage
Counts per codon, darker is more frequent3,804 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.2%
UUU102
UUC132
Leu L17.4%
UUA75
UUG32
CUU158
CUC156
CUA151
CUG88
Ile I6.9%
AUU132
AUC129
Met M4.0%
AUA89
AUG63
Val V6.1%
GUU62
GUC57
GUA71
GUG43
Ser S6.9%
UCU57
UCC74
UCA63
UCG16
AGU9
AGC43
Pro P5.8%
CCU46
CCC112
CCA48
CCG16
Thr T8.0%
ACU65
ACC115
ACA100
ACG26
Ala A8.7%
GCU59
GCC154
GCA98
GCG19
Tyr Y2.8%
UAU28
UAC78
His H2.9%
CAU27
CAC84
Gln Q2.4%
CAA68
CAG24
Asn N2.9%
AAU32
AAC79
Lys K1.8%
AAA49
AAG21
Asp D2.0%
GAU26
GAC49
Glu E2.3%
GAA55
GAG34
Cys C0.8%
UGU7
UGC23
Trp W3.2%
UGA83
UGG38
Arg R1.9%
CGU7
CGC13
CGA40
CGG14
Gly G6.8%
GGU31
GGC87
GGA83
GGG57
Stop 0.2%
UAA4
UAG3
AGA0
AGG0
Genome map
38 annotated features in NC_065813.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (47.2%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,011 | 942 bp | + | 47.6% |
| tRNA-Val | Transfer RNA | 1,012 | 1,084 | 73 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,085 | 2,811 | 1,727 bp | + | 46.8% |
| tRNA-Leu (UUR) | Transfer RNA | 2,812 | 2,885 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,886 | 3,860 | 975 bp | + | 50.3% |
| tRNA-Ile | Transfer RNA | 3,864 | 3,934 | 71 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,934 | 4,004 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 4,004 | 4,072 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,073 | 5,117 | 1,045 bp | + | 50.1% |
| tRNA-Trp | Transfer RNA | 5,118 | 5,190 | 73 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,192 | 5,260 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,262 | 5,334 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,372 | 5,436 | 65 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,437 | 5,503 | 67 bp | − | – |
| COX1 | Protein-coding gene | 5,505 | 7,049 | 1,545 bp | + | 48.2% |
| tRNA-Ser (UCN) | Transfer RNA | 7,053 | 7,123 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,133 | 7,203 | 71 bp | + | – |
| COX2 | Protein-coding gene | 7,211 | 7,901 | 691 bp | + | 45.3% |
| tRNA-Lys | Transfer RNA | 7,902 | 7,974 | 73 bp | + | – |
| ATP8 | Protein-coding gene | 7,976 | 8,143 | 168 bp | + | 44.1% |
| ATP6 | Protein-coding gene | 8,134 | 8,816 | 683 bp | + | 46.0% |
| COX3 | Protein-coding gene | 8,817 | 9,601 | 785 bp | + | 48.7% |
| tRNA-Gly | Transfer RNA | 9,602 | 9,673 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,674 | 10,022 | 349 bp | + | 51.0% |
| tRNA-Arg | Transfer RNA | 10,023 | 10,091 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,092 | 10,388 | 297 bp | + | 52.9% |
| ND4 | Protein-coding gene | 10,382 | 11,762 | 1,381 bp | + | 49.3% |
| tRNA-His | Transfer RNA | 11,763 | 11,832 | 70 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,833 | 11,899 | 67 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,904 | 11,976 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,979 | 13,817 | 1,839 bp | + | 47.3% |
| ND6 | Protein-coding gene | 13,814 | 14,335 | 522 bp | − | 51.2% |
| tRNA-Glu | Transfer RNA | 14,336 | 14,404 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,407 | 15,546 | 1,140 bp | + | 46.1% |
| tRNA-Thr | Transfer RNA | 15,548 | 15,619 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,621 | 15,691 | 71 bp | − | – |
| D-loop | Control region | 15,692 | 16,684 | 993 bp | – | 37.6% |