MitoAge

Pudu puda

Southern pudu

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Maximum lifespan
18.3 yr
AnAge record
mtDNA size
16,347 bp
RefSeq NC_020740.1
GC content
36.49%
Whole genome
Non-coding
978 bp
D-loop 716 bp

Where Southern pudu sits among 2,335 species

Whole-genome GC content against maximum lifespan. Southern pudu has the 1,023rd longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Southern pudu
  • This species
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Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,347 bp
GC skew (G − C) / (G + C)
−0.279
AT skew (A − T) / (A + T)
+0.058

Life history

Maximum lifespan
18.3 years
Adult weight
10 kg
Birth weight
900 g
Female sexual maturity
274 days
Male sexual maturity
320 days
Gestation or incubation
200 days
Litter or clutch size
1
Postnatal growth rate
0.0186 per day

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 02038)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Updated in build 2
In the database since
build 1 (2015-07-01)
Last changed
build 2 (2026-11-13)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,347 bp
Protein-coding11,338 bp
12S rRNA955 bp
16S rRNA1,567 bp
All tRNA1,512 bp
D-loop716 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1956 bp31.5%31.1%12.1%25.3%37.45%−0.352+0.007
ND2NADH dehydrogenase subunit 21,042 bp37.0%30.2%8.4%24.3%32.73%−0.484+0.101
COX1Cytochrome c oxidase subunit I1,545 bp29.3%32.8%16.1%21.9%37.99%−0.152−0.056
COX2Cytochrome c oxidase subunit II684 bp35.2%30.0%13.2%21.6%34.80%−0.244+0.081
ATP8ATP synthase F0 subunit 8201 bp39.8%30.8%5.5%23.9%29.35%−0.627+0.127
ATP6ATP synthase F0 subunit 6681 bp32.0%32.5%11.3%24.2%35.54%−0.364−0.007
COX3Cytochrome c oxidase subunit III784 bp26.4%33.3%14.4%25.9%40.31%−0.285−0.115
ND3NADH dehydrogenase subunit 3346 bp31.2%31.8%11.6%25.4%36.99%−0.375−0.009
ND4LNADH dehydrogenase subunit 4L297 bp33.0%32.0%12.5%22.6%35.02%−0.288+0.016
ND4NADH dehydrogenase subunit 41,378 bp32.9%32.9%10.0%24.2%34.18%−0.414+0.001
ND5NADH dehydrogenase subunit 51,821 bp33.9%31.4%10.3%24.4%34.71%−0.408+0.038
ND6NADH dehydrogenase subunit 6528 bp40.9%24.4%8.1%26.5%34.66%−0.530+0.252
CYTBCytochrome b1,140 bp31.1%28.9%13.2%26.9%40.09%−0.344+0.037
12S rRNA12S ribosomal RNA955 bp36.1%24.1%18.1%21.7%39.79%−0.089+0.200
16S rRNA16S ribosomal RNA1,567 bp38.0%24.7%17.0%19.9%37.09%−0.078+0.212
D-loopControl region (D-loop)716 bp30.0%31.3%16.3%22.3%38.69%−0.155−0.021

Codon usage

Counts per codon, darker is more frequent

3,799 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.6%
UUU162
UUC89
Leu L15.5%
UUA148
UUG16
CUU91
CUC72
CUA239
CUG22
Ile I8.9%
AUU240
AUC99
Met M7.0%
AUA232
AUG33
Val V4.9%
GUU53
GUC32
GUA89
GUG12
Ser S7.3%
UCU61
UCC47
UCA104
UCG4
AGU17
AGC43
Pro P5.1%
CCU54
CCC45
CCA90
CCG3
Thr T8.2%
ACU77
ACC72
ACA157
ACG4
Ala A6.3%
GCU60
GCC69
GCA107
GCG4
Tyr Y3.6%
UAU91
UAC46
His H2.3%
CAU36
CAC52
Gln Q2.4%
CAA81
CAG10
Asn N4.4%
AAU85
AAC81
Lys K2.5%
AAA91
AAG4
Asp D1.7%
GAU27
GAC36
Glu E2.6%
GAA81
GAG16
Cys C0.6%
UGU7
UGC16
Trp W2.7%
UGA98
UGG6
Arg R1.7%
CGU7
CGC12
CGA41
CGG3
Gly G5.7%
GGU38
GGC53
GGA98
GGG28
Stop 0.2%
UAA7
UAG0
AGA1
AGG0

Genome map

38 annotated features in NC_020740.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (36.5%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA16969 bp+–
12S rRNARibosomal RNA701,024955 bp+39.8%
tRNA-ValTransfer RNA1,0251,09167 bp+–
16S rRNARibosomal RNA1,0922,6581,567 bp+37.1%
tRNA-Leu (UUR)Transfer RNA2,6592,73375 bp+–
ND1Protein-coding gene2,7363,691956 bp+37.5%
tRNA-IleTransfer RNA3,6923,76069 bp+–
tRNA-GlnTransfer RNA3,7583,82972 bp−–
tRNA-MetTransfer RNA3,8323,90069 bp+–
ND2Protein-coding gene3,9014,9421,042 bp+32.7%
tRNA-TrpTransfer RNA4,9435,01068 bp+–
tRNA-AlaTransfer RNA5,0125,08069 bp−–
tRNA-AsnTransfer RNA5,0825,15473 bp−–
tRNA-CysTransfer RNA5,1875,25266 bp−–
tRNA-TyrTransfer RNA5,2535,32169 bp−–
COX1Protein-coding gene5,3236,8671,545 bp+38.0%
tRNA-Ser (UCN)Transfer RNA6,8656,93571 bp−–
tRNA-AspTransfer RNA6,9417,00868 bp+–
COX2Protein-coding gene7,0107,693684 bp+34.8%
tRNA-LysTransfer RNA7,6977,76569 bp+–
ATP8Protein-coding gene7,7677,967201 bp+29.4%
ATP6Protein-coding gene7,9288,608681 bp+35.5%
COX3Protein-coding gene8,6089,391784 bp+40.3%
tRNA-GlyTransfer RNA9,3929,46069 bp+–
ND3Protein-coding gene9,4619,806346 bp+37.0%
tRNA-ArgTransfer RNA9,8079,87670 bp+–
ND4LProtein-coding gene9,87710,173297 bp+35.0%
ND4Protein-coding gene10,16711,5441,378 bp+34.2%
tRNA-HisTransfer RNA11,54511,61369 bp+–
tRNA-Ser (AGY)Transfer RNA11,61411,67360 bp+–
tRNA-Leu (CUN)Transfer RNA11,67511,74470 bp+–
ND5Protein-coding gene11,74513,5651,821 bp+34.7%
ND6Protein-coding gene13,54914,076528 bp−34.7%
tRNA-GluTransfer RNA14,07714,14569 bp−–
CYTBProtein-coding gene14,15015,2891,140 bp+40.1%
tRNA-ThrTransfer RNA15,29315,36169 bp+–
tRNA-ProTransfer RNA15,36115,42666 bp−–
D-loopControl region15,42716,142716 bp–38.7%

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