Pyrrhocorax graculus
Alpine chough
GC content
43.32%
Whole genome
Non-coding
1,414 bp
D-loop 1,321 bp
Where Alpine chough sits among 2,335 species
Whole-genome GC content against maximum lifespan. Alpine chough has the 669th longest lifespan of them.
- This species
- Other birds
- Other classes
Base composition
Whole genome16,905 bp
- GC skew (G − C) / (G + C)
- −0.335
- AT skew (A − T) / (A + T)
- +0.102
Life history
- Maximum lifespan
- 24.4 years
- Adult weight
- 211.5 g
- Female sexual maturity
- 3 years
- Male sexual maturity
- 3 years
Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 00842)
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- Unchanged since build 1
- In the database since
- build 1 (2015-07-01)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,905 bp
Protein-coding11,379 bp
12S rRNA975 bp
16S rRNA1,602 bp
All tRNA1,544 bp
D-loop1,321 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 978 bp | 44.07% | −0.369 | +0.002 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,041 bp | 43.42% | −0.518 | +0.097 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 44.75% | −0.259 | +0.060 | |||||
| COX2Cytochrome c oxidase subunit II | 684 bp | 44.44% | −0.316 | +0.105 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 40.48% | −0.735 | +0.140 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 41.52% | −0.493 | +0.105 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 46.81% | −0.346 | +0.074 | |||||
| ND3NADH dehydrogenase subunit 3 | 351 bp | 44.16% | −0.290 | −0.020 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 48.49% | −0.431 | +0.020 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,378 bp | 43.11% | −0.471 | +0.115 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,818 bp | 42.52% | −0.451 | +0.093 | |||||
| ND6NADH dehydrogenase subunit 6 | 519 bp | 47.40% | −0.480 | +0.399 | |||||
| CYTBCytochrome b | 1,143 bp | 43.40% | −0.423 | +0.070 | |||||
| 12S rRNA12S ribosomal RNA | 975 bp | 47.08% | −0.081 | +0.171 | |||||
| 16S rRNA16S ribosomal RNA | 1,602 bp | 42.95% | −0.061 | +0.195 | |||||
| D-loopControl region (D-loop) | 1,321 bp | 39.89% | −0.362 | +0.010 |
Codon usage
Counts per codon, darker is more frequent3,798 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F5.9%
UUU53
UUC170
Leu L17.0%
UUA74
UUG8
CUU49
CUC100
CUA363
CUG52
Ile I8.1%
AUU114
AUC194
Met M4.4%
AUA121
AUG47
Val V5.2%
GUU48
GUC40
GUA90
GUG21
Ser S7.6%
UCU47
UCC76
UCA95
UCG9
AGU12
AGC51
Pro P5.9%
CCU53
CCC42
CCA125
CCG4
Thr T8.1%
ACU81
ACC97
ACA121
ACG7
Ala A8.2%
GCU74
GCC115
GCA111
GCG12
Tyr Y2.9%
UAU31
UAC79
His H2.8%
CAU31
CAC75
Gln Q2.6%
CAA90
CAG8
Asn N3.5%
AAU35
AAC99
Lys K2.2%
AAA82
AAG3
Asp D1.7%
GAU15
GAC50
Glu E2.4%
GAA73
GAG17
Cys C0.8%
UGU6
UGC24
Trp W2.8%
UGA106
UGG1
Arg R1.9%
CGU6
CGC14
CGA43
CGG8
Gly G5.7%
GGU27
GGC53
GGA106
GGG29
Stop 0.3%
UAA8
UAG0
AGA2
AGG1
Genome map
38 annotated features in NC_025927.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (43.3%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 70 | 70 bp | + | – |
| 12S rRNA | Ribosomal RNA | 71 | 1,045 | 975 bp | + | 47.1% |
| tRNA-Val | Transfer RNA | 1,046 | 1,115 | 70 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,116 | 2,717 | 1,602 bp | + | 43.0% |
| tRNA-Leu (UUR) | Transfer RNA | 2,718 | 2,792 | 75 bp | + | – |
| ND1 | Protein-coding gene | 2,802 | 3,779 | 978 bp | + | 44.1% |
| tRNA-Ile | Transfer RNA | 3,788 | 3,862 | 75 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,868 | 3,938 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,938 | 4,006 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,007 | 5,047 | 1,041 bp | + | 43.4% |
| tRNA-Trp | Transfer RNA | 5,048 | 5,117 | 70 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,119 | 5,187 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,201 | 5,273 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,276 | 5,342 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,342 | 5,412 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,414 | 6,964 | 1,551 bp | + | 44.8% |
| tRNA-Ser (UCN) | Transfer RNA | 6,956 | 7,027 | 72 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,032 | 7,100 | 69 bp | + | – |
| COX2 | Protein-coding gene | 7,110 | 7,793 | 684 bp | + | 44.4% |
| tRNA-Lys | Transfer RNA | 7,795 | 7,864 | 70 bp | + | – |
| ATP8 | Protein-coding gene | 7,866 | 8,033 | 168 bp | + | 40.5% |
| ATP6 | Protein-coding gene | 8,024 | 8,707 | 684 bp | + | 41.5% |
| COX3 | Protein-coding gene | 8,713 | 9,496 | 784 bp | + | 46.8% |
| tRNA-Gly | Transfer RNA | 9,497 | 9,565 | 69 bp | + | – |
| ND3 | Protein-coding gene | 9,566 | 9,916 | 351 bp | + | 44.2% |
| tRNA-Arg | Transfer RNA | 9,918 | 9,987 | 70 bp | + | – |
| ND4L | Protein-coding gene | 9,989 | 10,285 | 297 bp | + | 48.5% |
| ND4 | Protein-coding gene | 10,279 | 11,656 | 1,378 bp | + | 43.1% |
| tRNA-His | Transfer RNA | 11,657 | 11,726 | 70 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,728 | 11,791 | 64 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,792 | 11,862 | 71 bp | + | – |
| ND5 | Protein-coding gene | 11,863 | 13,680 | 1,818 bp | + | 42.5% |
| CYTB | Protein-coding gene | 13,690 | 14,832 | 1,143 bp | + | 43.4% |
| tRNA-Thr | Transfer RNA | 14,836 | 14,904 | 69 bp | + | – |
| tRNA-Pro | Transfer RNA | 14,915 | 14,984 | 70 bp | − | – |
| ND6 | Protein-coding gene | 14,994 | 15,512 | 519 bp | − | 47.4% |
| tRNA-Glu | Transfer RNA | 15,513 | 15,584 | 72 bp | − | – |
| D-loop | Control region | 15,585 | 16,905 | 1,321 bp | – | 39.9% |