Reinhardtius hippoglossoides

Greenland halibut

Maximum lifespan

30 yr

AnAge record

mtDNA size

18,017 bp

RefSeq NC_009711.1

GC content

45.10%

Whole genome

Non-coding

2,387 bp

D-loop 2,312 bp

Where Greenland halibut sits among 2,335 species

Whole-genome GC content against maximum lifespan. Greenland halibut has the 445th longest lifespan of them.

This species
Other ray-finned fishes
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome18,017 bp

GC skew (G − C) / (G + C): −0.265
AT skew (A − T) / (A + T): +0.026

Life history

Maximum lifespan: 30 years
Adult weight: 3.9 kg
Female sexual maturity: 10.5 years
Male sexual maturity: 8.5 years

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 04437)

About this record

Lifespan source: AnAge build 15
Based on: an animal in the wild
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Unchanged since build 1
In the database since: build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome18,017 bp

Protein-coding11,422 bp

12S rRNA949 bp

16S rRNA1,714 bp

All tRNA1,550 bp

D-loop2,312 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Reinhardtius hippoglossoides genes

ND1NADH dehydrogenase subunit 1	975 bp	24.4%	29.3%	15.7%	30.6%	46.26%	−0.322	−0.092
ND2NADH dehydrogenase subunit 2	1,046 bp	25.8%	26.8%	13.8%	33.7%	47.42%	−0.419	−0.018
COX1Cytochrome c oxidase subunit I	1,566 bp	25.2%	28.8%	18.4%	27.6%	45.98%	−0.200	−0.066
COX2Cytochrome c oxidase subunit II	691 bp	29.2%	28.1%	16.8%	25.9%	42.69%	−0.214	+0.020
ATP8ATP synthase F0 subunit 8	168 bp	33.3%	27.4%	9.5%	29.8%	39.29%	−0.515	+0.098
ATP6ATP synthase F0 subunit 6	683 bp	24.2%	31.0%	13.8%	31.0%	44.80%	−0.386	−0.125
COX3Cytochrome c oxidase subunit III	785 bp	23.7%	28.9%	16.9%	30.4%	47.39%	−0.285	−0.099
ND3NADH dehydrogenase subunit 3	349 bp	22.6%	28.9%	15.8%	32.7%	48.42%	−0.349	−0.122
ND4LNADH dehydrogenase subunit 4L	297 bp	22.2%	29.3%	14.8%	33.7%	48.49%	−0.389	−0.137
ND4NADH dehydrogenase subunit 4	1,381 bp	25.2%	28.4%	16.7%	29.7%	46.42%	−0.279	−0.059
ND5NADH dehydrogenase subunit 5	1,839 bp	26.9%	27.2%	15.7%	30.2%	45.95%	−0.316	−0.006
ND6NADH dehydrogenase subunit 6	522 bp	37.7%	15.7%	13.8%	32.8%	46.55%	−0.407	+0.412
CYTBCytochrome b	1,141 bp	23.1%	30.7%	15.8%	30.4%	46.19%	−0.317	−0.140
12S rRNA12S ribosomal RNA	949 bp	31.1%	20.5%	22.0%	26.3%	48.37%	−0.089	+0.204
16S rRNA16S ribosomal RNA	1,714 bp	32.4%	21.2%	20.9%	25.5%	46.38%	−0.099	+0.210
D-loopControl region (D-loop)	2,312 bp	33.9%	28.5%	12.5%	25.1%	37.59%	−0.335	+0.085

Codon usage

Counts per codon, darker is more frequent

Gene

3,811 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.3%

UUU131

UUC110

Leu L17.1%

UUA88

UUG33

CUU151

CUC167

CUA157

CUG54

Ile I6.9%

AUU151

AUC111

Met M4.1%

AUA89

AUG67

Val V6.1%

GUU85

GUC55

GUA78

GUG15

Ser S6.4%

UCU56

UCC57

UCA59

UCG17

AGU14

AGC39

Pro P5.9%

CCU55

CCC97

CCA58

CCG14

Thr T7.8%

ACU68

ACC101

ACA116

ACG14

Ala A9.2%

GCU72

GCC131

GCA133

GCG14

Tyr Y2.9%

UAU40

UAC70

His H2.8%

CAU25

CAC81

Gln Q2.5%

CAA82

CAG13

Asn N3.0%

AAU34

AAC79

Lys K2.0%

AAA62

AAG15

Asp D2.0%

GAU16

GAC62

Glu E2.7%

GAA73

GAG28

Cys C0.6%

UGU7

UGC16

Trp W3.2%

UGA96

UGG25

Arg R2.0%

CGU6

CGC15

CGA38

CGG19

Gly G6.5%

GGU53

GGC76

GGA62

GGG55

Stop 0.2%

UAA4

UAG1

AGA1

AGG0

Genome map

38 annotated features in NC_009711.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (45.1%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Reinhardtius hippoglossoides (NC_009711.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	68	68 bp	+	–
12S rRNA	Ribosomal RNA	69	1,017	949 bp	+	48.4%
tRNA-Val	Transfer RNA	1,018	1,091	74 bp	+	–
16S rRNA	Ribosomal RNA	1,092	2,805	1,714 bp	+	46.4%
tRNA-Leu (UUR)	Transfer RNA	2,806	2,879	74 bp	+	–
ND1	Protein-coding gene	2,880	3,854	975 bp	+	46.3%
tRNA-Ile	Transfer RNA	3,860	3,930	71 bp	+	–
tRNA-Gln	Transfer RNA	3,930	4,000	71 bp	−	–
tRNA-Met	Transfer RNA	4,000	4,068	69 bp	+	–
ND2	Protein-coding gene	4,069	5,114	1,046 bp	+	47.4%
tRNA-Trp	Transfer RNA	5,115	5,186	72 bp	+	–
tRNA-Ala	Transfer RNA	5,188	5,256	69 bp	−	–
tRNA-Asn	Transfer RNA	5,258	5,330	73 bp	−	–
tRNA-Cys	Transfer RNA	5,369	5,433	65 bp	−	–
tRNA-Tyr	Transfer RNA	5,433	5,501	69 bp	−	–
COX1	Protein-coding gene	5,503	7,068	1,566 bp	+	46.0%
tRNA-Ser (UCN)	Transfer RNA	7,064	7,134	71 bp	−	–
tRNA-Asp	Transfer RNA	7,149	7,219	71 bp	+	–
COX2	Protein-coding gene	7,226	7,916	691 bp	+	42.7%
tRNA-Lys	Transfer RNA	7,917	7,989	73 bp	+	–
ATP8	Protein-coding gene	7,991	8,158	168 bp	+	39.3%
ATP6	Protein-coding gene	8,149	8,831	683 bp	+	44.8%
COX3	Protein-coding gene	8,832	9,616	785 bp	+	47.4%
tRNA-Gly	Transfer RNA	9,617	9,688	72 bp	+	–
ND3	Protein-coding gene	9,689	10,037	349 bp	+	48.4%
tRNA-Arg	Transfer RNA	10,038	10,106	69 bp	+	–
ND4L	Protein-coding gene	10,107	10,403	297 bp	+	48.5%
ND4	Protein-coding gene	10,397	11,777	1,381 bp	+	46.4%
tRNA-His	Transfer RNA	11,778	11,847	70 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,848	11,914	67 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,919	11,991	73 bp	+	–
ND5	Protein-coding gene	11,992	13,830	1,839 bp	+	46.0%
ND6	Protein-coding gene	13,827	14,348	522 bp	−	46.6%
tRNA-Glu	Transfer RNA	14,349	14,417	69 bp	−	–
CYTB	Protein-coding gene	14,422	15,562	1,141 bp	+	46.2%
tRNA-Thr	Transfer RNA	15,563	15,635	73 bp	+	–
tRNA-Pro	Transfer RNA	15,635	15,705	71 bp	−	–
D-loop	Control region	15,706	18,017	2,312 bp	–	37.6%