Rupicapra rupicapra
Chamois
GC content
40.73%
Whole genome
Non-coding
1,056 bp
D-loop 829 bp
Where Chamois sits among 2,335 species
Whole-genome GC content against maximum lifespan. Chamois has the 1,069th longest lifespan of them.
- This species
- Other mammals
- Other classes
Base composition
Whole genome16,434 bp
- GC skew (G − C) / (G + C)
- −0.330
- AT skew (A − T) / (A + T)
- +0.118
Life history
- Maximum lifespan
- 17.6 years
- Adult weight
- 37.5 kg
- Birth weight
- 2.4 kg
- Female sexual maturity
- 674 days
- Male sexual maturity
- 669 days
- Gestation or incubation
- 122 days
- Litter or clutch size
- 1
- Litters per year
- 1
Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 01992)
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in captivity
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- Unchanged since build 1
- In the database since
- build 1 (2015-07-01)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,434 bp
Protein-coding11,341 bp
12S rRNA958 bp
16S rRNA1,574 bp
All tRNA1,508 bp
D-loop829 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 956 bp | 42.26% | −0.406 | +0.069 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,042 bp | 36.85% | −0.547 | +0.182 | |||||
| COX1Cytochrome c oxidase subunit I | 1,545 bp | 42.49% | −0.232 | −0.002 | |||||
| COX2Cytochrome c oxidase subunit II | 684 bp | 40.50% | −0.285 | +0.150 | |||||
| ATP8ATP synthase F0 subunit 8 | 201 bp | 33.33% | −0.582 | +0.194 | |||||
| ATP6ATP synthase F0 subunit 6 | 681 bp | 40.24% | −0.423 | +0.066 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 45.64% | −0.333 | −0.024 | |||||
| ND3NADH dehydrogenase subunit 3 | 346 bp | 41.91% | −0.393 | +0.015 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 41.75% | −0.435 | +0.098 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,378 bp | 41.73% | −0.426 | +0.059 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,821 bp | 40.03% | −0.484 | +0.114 | |||||
| ND6NADH dehydrogenase subunit 6 | 528 bp | 35.13% | −0.552 | +0.296 | |||||
| CYTBCytochrome b | 1,143 bp | 43.22% | −0.364 | +0.091 | |||||
| 12S rRNA12S ribosomal RNA | 958 bp | 42.48% | −0.160 | +0.285 | |||||
| 16S rRNA16S ribosomal RNA | 1,574 bp | 39.77% | −0.112 | +0.241 | |||||
| D-loopControl region (D-loop) | 829 bp | 44.75% | −0.186 | +0.044 |
Codon usage
Counts per codon, darker is more frequent3,779 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.4%
UUU101
UUC141
Leu L15.6%
UUA83
UUG10
CUU66
CUC110
CUA292
CUG30
Ile I8.6%
AUU166
AUC160
Met M6.7%
AUA207
AUG48
Val V4.9%
GUU41
GUC45
GUA87
GUG12
Ser S7.3%
UCU36
UCC71
UCA108
UCG7
AGU12
AGC43
Pro P5.0%
CCU29
CCC75
CCA79
CCG6
Thr T8.5%
ACU47
ACC97
ACA157
ACG20
Ala A6.5%
GCU37
GCC94
GCA107
GCG9
Tyr Y3.3%
UAU55
UAC71
His H2.6%
CAU29
CAC68
Gln Q2.3%
CAA78
CAG10
Asn N4.2%
AAU46
AAC114
Lys K2.6%
AAA86
AAG13
Asp D1.9%
GAU20
GAC51
Glu E2.5%
GAA73
GAG21
Cys C0.6%
UGU4
UGC20
Trp W2.8%
UGA98
UGG6
Arg R1.7%
CGU7
CGC14
CGA39
CGG3
Gly G5.6%
GGU27
GGC63
GGA96
GGG26
Stop 0.2%
UAA8
UAG0
AGA0
AGG0
Genome map
38 annotated features in NC_020633.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (40.7%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 67 | 67 bp | + | – |
| 12S rRNA | Ribosomal RNA | 68 | 1,025 | 958 bp | + | 42.5% |
| tRNA-Val | Transfer RNA | 1,026 | 1,090 | 65 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,091 | 2,664 | 1,574 bp | + | 39.8% |
| tRNA-Leu (UUR) | Transfer RNA | 2,665 | 2,739 | 75 bp | + | – |
| ND1 | Protein-coding gene | 2,742 | 3,697 | 956 bp | + | 42.3% |
| tRNA-Ile | Transfer RNA | 3,698 | 3,766 | 69 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,764 | 3,835 | 72 bp | − | – |
| tRNA-Met | Transfer RNA | 3,838 | 3,906 | 69 bp | + | – |
| ND2 | Protein-coding gene | 3,907 | 4,948 | 1,042 bp | + | 36.9% |
| tRNA-Trp | Transfer RNA | 4,949 | 5,015 | 67 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,017 | 5,085 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,087 | 5,159 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,192 | 5,259 | 68 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,260 | 5,327 | 68 bp | − | – |
| COX1 | Protein-coding gene | 5,329 | 6,873 | 1,545 bp | + | 42.5% |
| tRNA-Ser (UCN) | Transfer RNA | 6,871 | 6,941 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 6,947 | 7,014 | 68 bp | + | – |
| COX2 | Protein-coding gene | 7,016 | 7,699 | 684 bp | + | 40.5% |
| tRNA-Lys | Transfer RNA | 7,703 | 7,770 | 68 bp | + | – |
| ATP8 | Protein-coding gene | 7,772 | 7,972 | 201 bp | + | 33.3% |
| ATP6 | Protein-coding gene | 7,933 | 8,613 | 681 bp | + | 40.2% |
| COX3 | Protein-coding gene | 8,613 | 9,396 | 784 bp | + | 45.6% |
| tRNA-Gly | Transfer RNA | 9,397 | 9,465 | 69 bp | + | – |
| ND3 | Protein-coding gene | 9,466 | 9,811 | 346 bp | + | 41.9% |
| tRNA-Arg | Transfer RNA | 9,812 | 9,881 | 70 bp | + | – |
| ND4L | Protein-coding gene | 9,882 | 10,178 | 297 bp | + | 41.8% |
| ND4 | Protein-coding gene | 10,172 | 11,549 | 1,378 bp | + | 41.7% |
| tRNA-His | Transfer RNA | 11,550 | 11,619 | 70 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,620 | 11,678 | 59 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,680 | 11,749 | 70 bp | + | – |
| ND5 | Protein-coding gene | 11,750 | 13,570 | 1,821 bp | + | 40.0% |
| ND6 | Protein-coding gene | 13,554 | 14,081 | 528 bp | − | 35.1% |
| tRNA-Glu | Transfer RNA | 14,082 | 14,150 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,155 | 15,297 | 1,143 bp | + | 43.2% |
| tRNA-Thr | Transfer RNA | 15,298 | 15,367 | 70 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,367 | 15,432 | 66 bp | − | – |
| D-loop | Control region | 15,433 | 16,261 | 829 bp | – | 44.8% |