MitoAge

Rusa alfredi

Visayan spotted deer

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Maximum lifespan
18.5 yr
AnAge record
mtDNA size
16,355 bp
RefSeq NC_020744.1
GC content
37.66%
Whole genome
Non-coding
973 bp
D-loop 706 bp

Where Visayan spotted deer sits among 2,335 species

Whole-genome GC content against maximum lifespan. Visayan spotted deer has the 1,018th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Visayan spotted deer
  • This species
  • Other mammals
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,355 bp
GC skew (G − C) / (G + C)
−0.301
AT skew (A − T) / (A + T)
+0.078

Life history

Maximum lifespan
18.5 years
Adult weight
46.5 kg
Female sexual maturity
595 days
Gestation or incubation
243 days

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 02042)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Updated in build 2
In the database since
build 1 (2015-07-01)
Last changed
build 2 (2026-11-13)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,355 bp
Protein-coding11,338 bp
12S rRNA956 bp
16S rRNA1,575 bp
All tRNA1,516 bp
D-loop706 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1956 bp31.6%30.5%12.0%25.8%37.87%−0.365+0.017
ND2NADH dehydrogenase subunit 21,042 bp37.1%28.4%8.4%26.0%34.45%−0.510+0.133
COX1Cytochrome c oxidase subunit I1,545 bp29.1%32.4%15.9%22.6%38.51%−0.173−0.053
COX2Cytochrome c oxidase subunit II684 bp34.9%27.9%13.9%23.2%37.14%−0.252+0.112
ATP8ATP synthase F0 subunit 8201 bp42.3%31.8%5.0%20.9%25.87%−0.615+0.141
ATP6ATP synthase F0 subunit 6681 bp31.7%31.1%11.0%26.1%37.15%−0.407+0.009
COX3Cytochrome c oxidase subunit III784 bp27.7%29.7%14.2%28.4%42.60%−0.335−0.036
ND3NADH dehydrogenase subunit 3346 bp29.8%31.8%13.0%25.4%38.44%−0.323−0.033
ND4LNADH dehydrogenase subunit 4L297 bp31.6%31.0%12.5%24.9%37.37%−0.333+0.011
ND4NADH dehydrogenase subunit 41,378 bp32.1%30.6%10.6%26.8%37.37%−0.433+0.024
ND5NADH dehydrogenase subunit 51,821 bp33.4%29.2%10.7%26.7%37.40%−0.430+0.068
ND6NADH dehydrogenase subunit 6528 bp40.9%22.2%7.6%29.4%36.93%−0.590+0.297
CYTBCytochrome b1,140 bp31.2%28.1%12.9%27.8%40.70%−0.366+0.053
12S rRNA12S ribosomal RNA956 bp36.9%22.7%17.6%22.8%40.38%−0.130+0.239
16S rRNA16S ribosomal RNA1,575 bp38.3%25.0%16.9%19.9%36.76%−0.081+0.211
D-loopControl region (D-loop)706 bp29.7%30.7%16.7%22.8%39.52%−0.154−0.016

Codon usage

Counts per codon, darker is more frequent

3,799 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.6%
UUU135
UUC115
Leu L15.4%
UUA134
UUG16
CUU80
CUC85
CUA239
CUG32
Ile I8.9%
AUU210
AUC128
Met M6.9%
AUA221
AUG40
Val V4.9%
GUU47
GUC41
GUA80
GUG18
Ser S7.3%
UCU52
UCC64
UCA98
UCG8
AGU19
AGC38
Pro P5.0%
CCU42
CCC58
CCA89
CCG1
Thr T8.3%
ACU64
ACC67
ACA174
ACG9
Ala A6.3%
GCU51
GCC78
GCA107
GCG4
Tyr Y3.4%
UAU82
UAC47
His H2.5%
CAU37
CAC57
Gln Q2.4%
CAA89
CAG3
Asn N4.3%
AAU74
AAC91
Lys K2.5%
AAA90
AAG5
Asp D1.8%
GAU26
GAC42
Glu E2.6%
GAA80
GAG17
Cys C0.6%
UGU5
UGC18
Trp W2.7%
UGA94
UGG10
Arg R1.7%
CGU7
CGC14
CGA39
CGG3
Gly G5.7%
GGU36
GGC60
GGA96
GGG25
Stop 0.2%
UAA7
UAG0
AGA1
AGG0

Genome map

38 annotated features in NC_020744.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (37.7%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA17070 bp+–
12S rRNARibosomal RNA711,026956 bp+40.4%
tRNA-ValTransfer RNA1,0271,09367 bp+–
16S rRNARibosomal RNA1,0942,6681,575 bp+36.8%
tRNA-Leu (UUR)Transfer RNA2,6692,74375 bp+–
ND1Protein-coding gene2,7463,701956 bp+37.9%
tRNA-IleTransfer RNA3,7023,77069 bp+–
tRNA-GlnTransfer RNA3,7683,83972 bp−–
tRNA-MetTransfer RNA3,8423,91069 bp+–
ND2Protein-coding gene3,9114,9521,042 bp+34.5%
tRNA-TrpTransfer RNA4,9535,02068 bp+–
tRNA-AlaTransfer RNA5,0235,09169 bp−–
tRNA-AsnTransfer RNA5,0935,16573 bp−–
tRNA-CysTransfer RNA5,1985,26568 bp−–
tRNA-TyrTransfer RNA5,2665,33469 bp−–
COX1Protein-coding gene5,3366,8801,545 bp+38.5%
tRNA-Ser (UCN)Transfer RNA6,8786,94972 bp−–
tRNA-AspTransfer RNA6,9557,02268 bp+–
COX2Protein-coding gene7,0247,707684 bp+37.1%
tRNA-LysTransfer RNA7,7117,77868 bp+–
ATP8Protein-coding gene7,7807,980201 bp+25.9%
ATP6Protein-coding gene7,9418,621681 bp+37.2%
COX3Protein-coding gene8,6219,404784 bp+42.6%
tRNA-GlyTransfer RNA9,4059,47369 bp+–
ND3Protein-coding gene9,4749,819346 bp+38.4%
tRNA-ArgTransfer RNA9,8209,88970 bp+–
ND4LProtein-coding gene9,89010,186297 bp+37.4%
ND4Protein-coding gene10,18011,5571,378 bp+37.4%
tRNA-HisTransfer RNA11,55811,62669 bp+–
tRNA-Ser (AGY)Transfer RNA11,62711,68660 bp+–
tRNA-Leu (CUN)Transfer RNA11,68811,75770 bp+–
ND5Protein-coding gene11,75813,5781,821 bp+37.4%
ND6Protein-coding gene13,56214,089528 bp−36.9%
tRNA-GluTransfer RNA14,09014,15869 bp−–
CYTBProtein-coding gene14,16315,3021,140 bp+40.7%
tRNA-ThrTransfer RNA15,30615,37570 bp+–
tRNA-ProTransfer RNA15,37515,44066 bp−–
D-loopControl region15,44616,151706 bp–39.5%

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