MitoAge

Rusa timorensis

Timor deer

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Maximum lifespan
21.1 yr
AnAge record
mtDNA size
16,434 bp
RefSeq NC_020745.1
GC content
37.64%
Whole genome
Non-coding
1,056 bp
D-loop 766 bp

Where Timor deer sits among 2,335 species

Whole-genome GC content against maximum lifespan. Timor deer has the 833rd longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Timor deer
  • This species
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  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,434 bp
GC skew (G − C) / (G + C)
−0.293
AT skew (A − T) / (A + T)
+0.074

Life history

Maximum lifespan
21.1 years
Adult weight
63 kg
Female sexual maturity
464 days
Gestation or incubation
251 days
Litter or clutch size
1
Litters per year
1

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 02044)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Updated in build 2
In the database since
build 1 (2015-07-01)
Last changed
build 2 (2026-11-13)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,434 bp
Protein-coding11,338 bp
12S rRNA955 bp
16S rRNA1,572 bp
All tRNA1,516 bp
D-loop766 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1956 bp31.5%30.3%11.9%26.3%38.18%−0.375+0.019
ND2NADH dehydrogenase subunit 21,042 bp37.1%28.5%8.3%26.1%34.36%−0.520+0.132
COX1Cytochrome c oxidase subunit I1,545 bp29.0%32.3%16.1%22.6%38.71%−0.167−0.054
COX2Cytochrome c oxidase subunit II684 bp34.8%27.9%14.0%23.2%37.28%−0.247+0.110
ATP8ATP synthase F0 subunit 8201 bp39.8%31.8%7.5%20.9%28.36%−0.474+0.111
ATP6ATP synthase F0 subunit 6681 bp31.3%31.3%11.7%25.7%37.45%−0.3730.000
COX3Cytochrome c oxidase subunit III784 bp27.8%30.2%14.2%27.8%41.96%−0.325−0.042
ND3NADH dehydrogenase subunit 3346 bp30.6%30.6%12.4%26.3%38.73%−0.3580.000
ND4LNADH dehydrogenase subunit 4L297 bp30.3%33.0%13.5%23.2%36.70%−0.266−0.043
ND4NADH dehydrogenase subunit 41,378 bp32.1%30.3%10.7%27.0%37.66%−0.434+0.029
ND5NADH dehydrogenase subunit 51,821 bp33.4%29.7%10.4%26.5%36.90%−0.435+0.060
ND6NADH dehydrogenase subunit 6528 bp40.2%22.3%8.3%29.2%37.50%−0.556+0.285
CYTBCytochrome b1,140 bp31.3%29.1%12.9%26.7%39.56%−0.348+0.036
12S rRNA12S ribosomal RNA955 bp37.0%22.4%17.6%23.0%40.63%−0.134+0.245
16S rRNA16S ribosomal RNA1,572 bp38.0%25.3%17.1%19.7%36.77%−0.069+0.201
D-loopControl region (D-loop)766 bp30.9%31.5%16.4%21.1%37.60%−0.125−0.008

Codon usage

Counts per codon, darker is more frequent

3,799 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.6%
UUU146
UUC106
Leu L15.5%
UUA136
UUG14
CUU82
CUC82
CUA246
CUG28
Ile I8.8%
AUU210
AUC125
Met M6.9%
AUA216
AUG46
Val V4.9%
GUU51
GUC41
GUA80
GUG15
Ser S7.3%
UCU54
UCC62
UCA97
UCG8
AGU21
AGC35
Pro P5.0%
CCU37
CCC62
CCA90
CCG2
Thr T8.1%
ACU56
ACC73
ACA169
ACG8
Ala A6.4%
GCU47
GCC84
GCA109
GCG5
Tyr Y3.4%
UAU78
UAC52
His H2.4%
CAU37
CAC56
Gln Q2.4%
CAA86
CAG7
Asn N4.4%
AAU87
AAC79
Lys K2.5%
AAA89
AAG6
Asp D1.8%
GAU27
GAC40
Glu E2.6%
GAA80
GAG17
Cys C0.6%
UGU6
UGC16
Trp W2.7%
UGA96
UGG8
Arg R1.7%
CGU5
CGC17
CGA39
CGG2
Gly G5.7%
GGU37
GGC57
GGA97
GGG27
Stop 0.2%
UAA7
UAG0
AGA0
AGG1

Genome map

38 annotated features in NC_020745.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (37.6%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA16969 bp+–
12S rRNARibosomal RNA701,024955 bp+40.6%
tRNA-ValTransfer RNA1,0251,09167 bp+–
16S rRNARibosomal RNA1,0922,6631,572 bp+36.8%
tRNA-Leu (UUR)Transfer RNA2,6642,73875 bp+–
ND1Protein-coding gene2,7413,696956 bp+38.2%
tRNA-IleTransfer RNA3,6973,76569 bp+–
tRNA-GlnTransfer RNA3,7633,83472 bp−–
tRNA-MetTransfer RNA3,8373,90569 bp+–
ND2Protein-coding gene3,9064,9471,042 bp+34.4%
tRNA-TrpTransfer RNA4,9485,01568 bp+–
tRNA-AlaTransfer RNA5,0175,08670 bp−–
tRNA-AsnTransfer RNA5,0885,16073 bp−–
tRNA-CysTransfer RNA5,1935,26068 bp−–
tRNA-TyrTransfer RNA5,2615,32969 bp−–
COX1Protein-coding gene5,3316,8751,545 bp+38.7%
tRNA-Ser (UCN)Transfer RNA6,8736,94371 bp−–
tRNA-AspTransfer RNA6,9497,01668 bp+–
COX2Protein-coding gene7,0187,701684 bp+37.3%
tRNA-LysTransfer RNA7,7057,77268 bp+–
ATP8Protein-coding gene7,7747,974201 bp+28.4%
ATP6Protein-coding gene7,9358,615681 bp+37.5%
COX3Protein-coding gene8,6159,398784 bp+42.0%
tRNA-GlyTransfer RNA9,3999,46769 bp+–
ND3Protein-coding gene9,4689,813346 bp+38.7%
tRNA-ArgTransfer RNA9,8149,88471 bp+–
ND4LProtein-coding gene9,88510,181297 bp+36.7%
ND4Protein-coding gene10,17511,5521,378 bp+37.7%
tRNA-HisTransfer RNA11,55311,62169 bp+–
tRNA-Ser (AGY)Transfer RNA11,62211,68160 bp+–
tRNA-Leu (CUN)Transfer RNA11,68311,75270 bp+–
ND5Protein-coding gene11,75313,5731,821 bp+36.9%
ND6Protein-coding gene13,55714,084528 bp−37.5%
tRNA-GluTransfer RNA14,08514,15369 bp−–
CYTBProtein-coding gene14,15815,2971,140 bp+39.6%
tRNA-ThrTransfer RNA15,30115,37070 bp+–
tRNA-ProTransfer RNA15,37015,43566 bp−–
D-loopControl region15,44116,206766 bp–37.6%

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