MitoAge

Rusa unicolor

Sambar

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Maximum lifespan
26.4 yr
AnAge record
mtDNA size
16,505 bp
RefSeq NC_008414.3
GC content
37.53%
Whole genome
Non-coding
1,140 bp
D-loop 1,081 bp

Where Sambar sits among 2,335 species

Whole-genome GC content against maximum lifespan. Sambar has the 573rd longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Sambar
  • This species
  • Other mammals
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,505 bp
GC skew (G − C) / (G + C)
−0.283
AT skew (A − T) / (A + T)
+0.073

Life history

Maximum lifespan
26.4 years
Adult weight
185 kg
Birth weight
10 kg
Female sexual maturity
650 days
Gestation or incubation
232 days
Litter or clutch size
1
Litters per year
1

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 02045)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, large sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,505 bp
Protein-coding11,318 bp
12S rRNA955 bp
16S rRNA1,581 bp
All tRNA1,513 bp
D-loop1,081 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1955 bp31.3%29.7%12.0%26.9%38.95%−0.382+0.026
ND2NADH dehydrogenase subunit 21,042 bp37.2%28.9%8.6%25.2%33.88%−0.490+0.126
COX1Cytochrome c oxidase subunit I1,543 bp29.0%32.2%16.1%22.7%38.82%−0.169−0.053
COX2Cytochrome c oxidase subunit II684 bp35.4%27.9%13.6%23.1%36.70%−0.259+0.118
ATP8ATP synthase F0 subunit 8201 bp41.8%31.8%7.0%19.4%26.37%−0.472+0.135
ATP6ATP synthase F0 subunit 6681 bp31.4%31.0%11.6%26.0%37.59%−0.383+0.007
COX3Cytochrome c oxidase subunit III784 bp27.7%30.2%14.4%27.7%42.09%−0.315−0.044
ND3NADH dehydrogenase subunit 3346 bp30.9%31.2%12.1%25.7%37.86%−0.359−0.005
ND4LNADH dehydrogenase subunit 4L297 bp31.3%32.7%12.8%23.2%36.03%−0.290−0.021
ND4NADH dehydrogenase subunit 41,378 bp31.9%31.3%10.8%26.1%36.87%−0.413+0.009
ND5NADH dehydrogenase subunit 51,791 bp33.5%29.4%10.6%26.5%37.07%−0.431+0.065
ND6NADH dehydrogenase subunit 6528 bp40.3%22.9%8.0%28.8%36.74%−0.567+0.275
CYTBCytochrome b1,140 bp31.2%28.7%13.0%27.1%40.09%−0.352+0.042
12S rRNA12S ribosomal RNA955 bp36.8%22.3%17.7%23.2%40.94%−0.136+0.245
16S rRNA16S ribosomal RNA1,581 bp38.0%25.4%17.3%19.3%36.56%−0.055+0.198
D-loopControl region (D-loop)1,081 bp31.7%32.2%15.4%20.7%36.08%−0.149−0.007

Codon usage

Counts per codon, darker is more frequent

3,788 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.7%
UUU148
UUC104
Leu L15.4%
UUA138
UUG14
CUU83
CUC78
CUA247
CUG23
Ile I8.7%
AUU201
AUC129
Met M7.0%
AUA218
AUG46
Val V5.0%
GUU51
GUC41
GUA88
GUG11
Ser S7.2%
UCU53
UCC61
UCA95
UCG9
AGU22
AGC33
Pro P5.1%
CCU43
CCC57
CCA87
CCG5
Thr T8.0%
ACU61
ACC64
ACA171
ACG7
Ala A6.4%
GCU46
GCC86
GCA107
GCG4
Tyr Y3.4%
UAU81
UAC49
His H2.4%
CAU37
CAC54
Gln Q2.5%
CAA87
CAG6
Asn N4.4%
AAU79
AAC87
Lys K2.6%
AAA90
AAG7
Asp D1.8%
GAU27
GAC42
Glu E2.5%
GAA79
GAG17
Cys C0.6%
UGU6
UGC17
Trp W2.7%
UGA95
UGG9
Arg R1.7%
CGU6
CGC16
CGA38
CGG3
Gly G5.8%
GGU33
GGC60
GGA96
GGG29
Stop 0.2%
UAA6
UAG0
AGA1
AGG0

Genome map

38 annotated features in NC_008414.3

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (37.5%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA16969 bp+–
12S rRNARibosomal RNA701,024955 bp+40.9%
tRNA-ValTransfer RNA1,0251,09167 bp+–
16S rRNARibosomal RNA1,0912,6711,581 bp+36.6%
tRNA-Leu (UUR)Transfer RNA2,6722,74675 bp+–
ND1Protein-coding gene2,7493,703955 bp+39.0%
tRNA-IleTransfer RNA3,7053,77369 bp+–
tRNA-GlnTransfer RNA3,7713,84272 bp−–
tRNA-MetTransfer RNA3,8453,91369 bp+–
ND2Protein-coding gene3,9144,9551,042 bp+33.9%
tRNA-TrpTransfer RNA4,9565,02368 bp+–
tRNA-AlaTransfer RNA5,0275,09468 bp−–
tRNA-AsnTransfer RNA5,0965,16873 bp−–
tRNA-CysTransfer RNA5,2015,26868 bp−–
tRNA-TyrTransfer RNA5,2695,33668 bp−–
COX1Protein-coding gene5,3396,8811,543 bp+38.8%
tRNA-Ser (AGY)Transfer RNA6,8816,95171 bp−–
tRNA-AspTransfer RNA6,9577,02468 bp+–
COX2Protein-coding gene7,0267,709684 bp+36.7%
tRNA-LysTransfer RNA7,7137,78068 bp+–
ATP8Protein-coding gene7,7827,982201 bp+26.4%
ATP6Protein-coding gene7,9438,623681 bp+37.6%
COX3Protein-coding gene8,6239,406784 bp+42.1%
tRNA-GlyTransfer RNA9,4079,47569 bp+–
ND3Protein-coding gene9,4769,821346 bp+37.9%
tRNA-ArgTransfer RNA9,8239,89169 bp+–
ND4LProtein-coding gene9,89210,188297 bp+36.0%
ND4Protein-coding gene10,18211,5591,378 bp+36.9%
tRNA-HisTransfer RNA11,56011,62869 bp+–
tRNA-Ser (UCN)Transfer RNA11,62911,68860 bp+–
tRNA-Leu (CUN)Transfer RNA11,68911,75567 bp+–
ND5Protein-coding gene11,75913,5491,791 bp+37.1%
ND6Protein-coding gene13,54614,073528 bp−36.7%
tRNA-GluTransfer RNA14,07414,14471 bp−–
CYTBProtein-coding gene14,14715,2861,140 bp+40.1%
tRNA-ThrTransfer RNA15,28715,35872 bp+–
tRNA-ProTransfer RNA15,35915,42466 bp+–
D-loopControl region15,42516,5051,081 bp–36.1%

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