MitoAge

Salamandrella keyserlingii

Siberian salamander

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Maximum lifespan
8 yr
AnAge record
mtDNA size
16,338 bp
RefSeq NC_008082.1
GC content
34.80%
Whole genome
Non-coding
913 bp
D-loop 736 bp

Where Siberian salamander sits among 2,335 species

Whole-genome GC content against maximum lifespan. Siberian salamander has the 1,729th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Siberian salamander
  • This species
  • Other amphibians
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,338 bp
GC skew (G − C) / (G + C)
−0.189
AT skew (A − T) / (A + T)
+0.019

Life history

Maximum lifespan
8 years
Gestation or incubation
23 days
Litter or clutch size
70

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 00153)

About this record

Lifespan source
AnAge build 15
Based on
an animal in the wild
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,338 bp
Protein-coding11,365 bp
12S rRNA932 bp
16S rRNA1,605 bp
All tRNA1,529 bp
D-loop736 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1972 bp30.6%35.2%13.4%20.9%34.26%−0.219−0.070
ND2NADH dehydrogenase subunit 21,044 bp34.0%33.3%10.3%22.1%32.53%−0.363+0.010
COX1Cytochrome c oxidase subunit I1,551 bp27.1%34.9%17.0%21.0%37.91%−0.105−0.126
COX2Cytochrome c oxidase subunit II688 bp33.9%32.3%13.8%20.1%33.87%−0.185+0.024
ATP8ATP synthase F0 subunit 8168 bp38.7%35.7%9.5%16.1%25.60%−0.256+0.040
ATP6ATP synthase F0 subunit 6684 bp32.2%36.1%11.0%20.8%31.73%−0.309−0.058
COX3Cytochrome c oxidase subunit III785 bp28.9%34.0%16.2%20.9%37.07%−0.127−0.081
ND3NADH dehydrogenase subunit 3349 bp31.2%35.5%13.2%20.1%33.24%−0.207−0.064
ND4LNADH dehydrogenase subunit 4L297 bp28.6%37.7%13.8%19.9%33.67%−0.180−0.137
ND4NADH dehydrogenase subunit 41,378 bp32.6%32.0%12.8%22.6%35.37%−0.277+0.009
ND5NADH dehydrogenase subunit 51,821 bp33.3%33.6%12.7%20.3%33.06%−0.229−0.004
ND6NADH dehydrogenase subunit 6519 bp43.2%19.7%9.6%27.6%37.19%−0.482+0.374
CYTBCytochrome b1,142 bp30.4%32.7%13.7%23.2%36.95%−0.256−0.036
12S rRNA12S ribosomal RNA932 bp36.8%25.8%17.4%20.1%37.45%−0.072+0.177
16S rRNA16S ribosomal RNA1,605 bp40.8%27.0%15.8%16.4%32.15%−0.019+0.203
D-loopControl region (D-loop)736 bp30.7%36.1%14.7%18.5%33.15%−0.115−0.081

Codon usage

Counts per codon, darker is more frequent

3,794 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.7%
UUU191
UUC64
Leu L15.9%
UUA288
UUG36
CUU98
CUC35
CUA124
CUG23
Ile I8.5%
AUU248
AUC74
Met M6.5%
AUA192
AUG54
Val V4.8%
GUU66
GUC22
GUA77
GUG18
Ser S7.8%
UCU55
UCC37
UCA144
UCG5
AGU25
AGC29
Pro P5.3%
CCU63
CCC32
CCA94
CCG12
Thr T7.0%
ACU65
ACC68
ACA125
ACG9
Ala A6.9%
GCU60
GCC65
GCA126
GCG11
Tyr Y3.0%
UAU89
UAC24
His H2.5%
CAU49
CAC45
Gln Q2.4%
CAA81
CAG11
Asn N4.0%
AAU91
AAC62
Lys K2.3%
AAA80
AAG9
Asp D1.8%
GAU45
GAC24
Glu E2.6%
GAA83
GAG16
Cys C0.8%
UGU15
UGC14
Trp W3.0%
UGA100
UGG14
Arg R1.9%
CGU13
CGC8
CGA48
CGG4
Gly G6.0%
GGU41
GGC39
GGA96
GGG50
Stop 0.2%
UAA6
UAG1
AGA1
AGG0

Genome map

38 annotated features in NC_008082.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (34.8%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA16969 bp+–
12S rRNARibosomal RNA701,001932 bp+37.5%
tRNA-ValTransfer RNA1,0021,07069 bp+–
16S rRNARibosomal RNA1,0712,6751,605 bp+32.2%
tRNA-Leu (UUR)Transfer RNA2,6762,75075 bp+–
ND1Protein-coding gene2,7513,722972 bp+34.3%
tRNA-IleTransfer RNA3,7213,79474 bp+–
tRNA-GlnTransfer RNA3,7923,86372 bp−–
tRNA-MetTransfer RNA3,8633,93169 bp+–
ND2Protein-coding gene3,9324,9751,044 bp+32.5%
tRNA-TrpTransfer RNA4,9745,04269 bp+–
tRNA-AlaTransfer RNA5,0455,11369 bp−–
tRNA-AsnTransfer RNA5,1155,18773 bp−–
tRNA-CysTransfer RNA5,2245,28966 bp−–
tRNA-TyrTransfer RNA5,2905,35768 bp−–
COX1Protein-coding gene5,3596,9091,551 bp+37.9%
tRNA-Ser (AGY)Transfer RNA6,9106,98071 bp−–
tRNA-AspTransfer RNA6,9837,05068 bp+–
COX2Protein-coding gene7,0537,740688 bp+33.9%
tRNA-LysTransfer RNA7,7417,80969 bp+–
ATP8Protein-coding gene7,8117,978168 bp+25.6%
ATP6Protein-coding gene7,9698,652684 bp+31.7%
COX3Protein-coding gene8,6529,436785 bp+37.1%
tRNA-GlyTransfer RNA9,4369,50368 bp+–
ND3Protein-coding gene9,5049,852349 bp+33.2%
tRNA-ArgTransfer RNA9,8559,92167 bp+–
ND4LProtein-coding gene9,92210,218297 bp+33.7%
ND4Protein-coding gene10,21211,5891,378 bp+35.4%
tRNA-HisTransfer RNA11,59011,65869 bp+–
tRNA-Ser (UCN)Transfer RNA11,65911,72668 bp+–
tRNA-Leu (CUN)Transfer RNA11,72711,79872 bp+–
ND5Protein-coding gene11,79913,6191,821 bp+33.1%
ND6Protein-coding gene13,60514,123519 bp−37.2%
tRNA-GluTransfer RNA14,12414,19168 bp−–
CYTBProtein-coding gene14,19615,3371,142 bp+37.0%
tRNA-ThrTransfer RNA15,33715,40468 bp+–
tRNA-ProTransfer RNA15,53115,60272 bp−–
D-loopControl region15,60316,338736 bp–33.2%

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