MitoAge

Sus scrofa

Wild boar

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Maximum lifespan
27 yr
AnAge record
mtDNA size
16,613 bp
RefSeq NC_000845.1
GC content
39.46%
Whole genome
Non-coding
1,234 bp
D-loop 1,175 bp

Where Wild boar sits among 2,335 species

Whole-genome GC content against maximum lifespan. Wild boar has the 549th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Wild boar
  • This species
  • Other mammals
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,613 bp
GC skew (G − C) / (G + C)
−0.328
AT skew (A − T) / (A + T)
+0.147

Life history

Maximum lifespan
27 years
Adult weight
130 kg
Birth weight
960 g
Basal metabolic rate
104.15 W
Body temperature
39 °C
Female sexual maturity
334 days
Male sexual maturity
2.1 years
Gestation or incubation
115 days
Litter or clutch size
7
Litters per year
1.5
Postnatal growth rate
0.0095 per day

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 02060)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
high, large sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,613 bp
Protein-coding11,341 bp
12S rRNA960 bp
16S rRNA1,571 bp
All tRNA1,507 bp
D-loop1,175 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1955 bp33.0%24.7%12.8%29.5%42.30%−0.396+0.143
ND2NADH dehydrogenase subunit 21,042 bp39.0%24.0%9.6%27.4%37.04%−0.482+0.238
COX1Cytochrome c oxidase subunit I1,545 bp29.3%29.3%16.6%24.9%41.42%−0.200+0.001
COX2Cytochrome c oxidase subunit II688 bp34.6%26.6%13.1%25.7%38.81%−0.326+0.131
ATP8ATP synthase F0 subunit 8204 bp40.7%27.5%7.4%24.5%31.86%−0.538+0.194
ATP6ATP synthase F0 subunit 6681 bp34.1%27.5%10.3%28.2%38.47%−0.466+0.107
COX3Cytochrome c oxidase subunit III784 bp29.3%26.7%15.1%29.0%44.01%−0.316+0.048
ND3NADH dehydrogenase subunit 3346 bp34.7%25.7%10.7%28.9%39.60%−0.460+0.148
ND4LNADH dehydrogenase subunit 4L297 bp31.6%31.0%12.5%24.9%37.37%−0.333+0.011
ND4NADH dehydrogenase subunit 41,378 bp34.2%25.9%10.2%29.8%39.91%−0.491+0.138
ND5NADH dehydrogenase subunit 51,821 bp35.3%26.1%10.4%28.1%38.55%−0.459+0.149
ND6NADH dehydrogenase subunit 6528 bp44.9%20.8%7.2%27.1%34.28%−0.580+0.366
CYTBCytochrome b1,140 bp31.6%26.6%13.0%28.9%41.84%−0.379+0.086
12S rRNA12S ribosomal RNA960 bp36.6%22.6%17.6%23.2%40.83%−0.138+0.236
16S rRNA16S ribosomal RNA1,571 bp38.6%23.7%16.6%21.1%37.68%−0.118+0.240
D-loopControl region (D-loop)1,175 bp33.7%25.4%14.5%26.4%40.85%−0.292+0.140

Codon usage

Counts per codon, darker is more frequent

3,801 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.0%
UUU88
UUC140
Leu L15.2%
UUA92
UUG18
CUU52
CUC69
CUA309
CUG39
Ile I8.9%
AUU158
AUC179
Met M6.9%
AUA223
AUG40
Val V4.8%
GUU31
GUC21
GUA116
GUG14
Ser S7.4%
UCU30
UCC75
UCA118
UCG4
AGU11
AGC43
Pro P5.0%
CCU30
CCC64
CCA93
CCG3
Thr T8.3%
ACU50
ACC83
ACA176
ACG5
Ala A6.8%
GCU43
GCC93
GCA118
GCG3
Tyr Y3.7%
UAU62
UAC78
His H2.7%
CAU22
CAC79
Gln Q2.3%
CAA84
CAG3
Asn N4.2%
AAU43
AAC115
Lys K2.6%
AAA95
AAG5
Asp D1.7%
GAU22
GAC43
Glu E2.7%
GAA88
GAG13
Cys C0.7%
UGU8
UGC17
Trp W2.7%
UGA100
UGG4
Arg R1.7%
CGU6
CGC11
CGA48
CGG0
Gly G5.7%
GGU36
GGC51
GGA103
GGG27
Stop 0.2%
UAA6
UAG0
AGA1
AGG0

Genome map

38 annotated features in NC_000845.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (39.5%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
D-loopControl region11,1751,175 bp–40.9%
tRNA-PheTransfer RNA1,1761,24570 bp+–
12S rRNARibosomal RNA1,2462,205960 bp+40.8%
tRNA-ValTransfer RNA2,2062,27368 bp+–
16S rRNARibosomal RNA2,2743,8441,571 bp+37.7%
tRNA-Leu (UUR)Transfer RNA3,8453,91975 bp+–
ND1Protein-coding gene3,9224,876955 bp+42.3%
tRNA-IleTransfer RNA4,8774,94569 bp+–
tRNA-GlnTransfer RNA4,9435,01573 bp−–
tRNA-MetTransfer RNA5,0175,08670 bp+–
ND2Protein-coding gene5,0876,1281,042 bp+37.0%
tRNA-TrpTransfer RNA6,1296,19668 bp+–
tRNA-AlaTransfer RNA6,2036,27068 bp−–
tRNA-AsnTransfer RNA6,2726,34675 bp−–
tRNA-CysTransfer RNA6,3796,44466 bp−–
tRNA-TyrTransfer RNA6,4446,50966 bp−–
COX1Protein-coding gene6,5118,0551,545 bp+41.4%
tRNA-Ser (UCN)Transfer RNA8,0598,12971 bp−–
tRNA-AspTransfer RNA8,1358,20268 bp+–
COX2Protein-coding gene8,2038,890688 bp+38.8%
tRNA-LysTransfer RNA8,8918,95767 bp+–
ATP8Protein-coding gene8,9599,162204 bp+31.9%
ATP6Protein-coding gene9,1209,800681 bp+38.5%
COX3Protein-coding gene9,80010,583784 bp+44.0%
tRNA-GlyTransfer RNA10,58410,65269 bp+–
ND3Protein-coding gene10,65310,998346 bp+39.6%
tRNA-ArgTransfer RNA11,00011,06869 bp+–
ND4LProtein-coding gene11,06911,365297 bp+37.4%
ND4Protein-coding gene11,35912,7361,378 bp+39.9%
tRNA-HisTransfer RNA12,73712,80569 bp+–
tRNA-Ser (AGY)Transfer RNA12,80612,86459 bp+–
tRNA-Leu (CUN)Transfer RNA12,86512,93470 bp+–
ND5Protein-coding gene12,93514,7551,821 bp+38.6%
ND6Protein-coding gene14,73915,266528 bp−34.3%
tRNA-GluTransfer RNA15,26715,33569 bp−–
CYTBProtein-coding gene15,34216,4811,140 bp+41.8%
tRNA-ThrTransfer RNA16,48216,54968 bp+–
tRNA-ProTransfer RNA16,55016,61364 bp−–

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