MitoAge

Sus verrucosus

Javan pig

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Maximum lifespan
17 yr
AnAge record
mtDNA size
16,479 bp
RefSeq NC_023536.1
GC content
39.02%
Whole genome
Non-coding
1,105 bp
D-loop 1,047 bp

Where Javan pig sits among 2,335 species

Whole-genome GC content against maximum lifespan. Javan pig has the 1,096th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Javan pig
  • This species
  • Other mammals
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,479 bp
GC skew (G − C) / (G + C)
−0.333
AT skew (A − T) / (A + T)
+0.144

Life history

Maximum lifespan
17 years
Adult weight
76 kg
Birth weight
1 kg
Female sexual maturity
274 days
Gestation or incubation
120 days
Litter or clutch size
6

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 02061)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, small sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,479 bp
Protein-coding11,335 bp
12S rRNA959 bp
16S rRNA1,570 bp
All tRNA1,510 bp
D-loop1,047 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1955 bp32.7%25.0%12.4%29.9%42.30%−0.416+0.132
ND2NADH dehydrogenase subunit 21,042 bp39.5%24.3%9.1%27.1%36.18%−0.496+0.239
COX1Cytochrome c oxidase subunit I1,545 bp29.4%29.4%16.5%24.7%41.23%−0.1990.000
COX2Cytochrome c oxidase subunit II682 bp34.5%27.6%13.5%24.5%37.98%−0.290+0.111
ATP8ATP synthase F0 subunit 8204 bp40.2%27.5%7.8%24.5%32.35%−0.515+0.188
ATP6ATP synthase F0 subunit 6681 bp34.7%26.4%10.0%28.9%38.91%−0.487+0.135
COX3Cytochrome c oxidase subunit III784 bp29.7%27.7%14.7%27.9%42.60%−0.311+0.036
ND3NADH dehydrogenase subunit 3346 bp34.7%25.7%10.7%28.9%39.60%−0.460+0.148
ND4LNADH dehydrogenase subunit 4L297 bp32.7%31.0%11.4%24.9%36.36%−0.370+0.026
ND4NADH dehydrogenase subunit 41,378 bp34.2%26.4%10.0%29.4%39.41%−0.492+0.128
ND5NADH dehydrogenase subunit 51,821 bp35.0%26.5%10.5%28.0%38.50%−0.455+0.138
ND6NADH dehydrogenase subunit 6528 bp44.1%21.2%8.0%26.7%34.66%−0.541+0.351
CYTBCytochrome b1,140 bp31.6%26.1%13.0%29.3%42.28%−0.386+0.094
12S rRNA12S ribosomal RNA959 bp37.2%22.7%17.2%22.8%40.04%−0.141+0.242
16S rRNA16S ribosomal RNA1,570 bp39.0%23.6%16.4%21.0%37.39%−0.121+0.245
D-loopControl region (D-loop)1,047 bp35.2%26.3%12.8%25.7%38.49%−0.335+0.146

Codon usage

Counts per codon, darker is more frequent

3,799 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.0%
UUU93
UUC136
Leu L15.2%
UUA93
UUG14
CUU54
CUC68
CUA316
CUG33
Ile I8.8%
AUU166
AUC169
Met M7.1%
AUA227
AUG41
Val V4.7%
GUU30
GUC20
GUA112
GUG15
Ser S7.5%
UCU36
UCC72
UCA118
UCG2
AGU10
AGC46
Pro P5.0%
CCU26
CCC68
CCA93
CCG4
Thr T8.2%
ACU54
ACC80
ACA174
ACG4
Ala A6.7%
GCU42
GCC92
GCA121
GCG1
Tyr Y3.7%
UAU63
UAC78
His H2.7%
CAU24
CAC78
Gln Q2.3%
CAA83
CAG5
Asn N4.1%
AAU45
AAC112
Lys K2.6%
AAA94
AAG5
Asp D1.7%
GAU18
GAC47
Glu E2.6%
GAA82
GAG18
Cys C0.7%
UGU9
UGC17
Trp W2.7%
UGA100
UGG4
Arg R1.7%
CGU6
CGC11
CGA47
CGG1
Gly G5.7%
GGU36
GGC50
GGA108
GGG21
Stop 0.2%
UAA6
UAG0
AGA1
AGG0

Genome map

38 annotated features in NC_023536.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (39.0%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
D-loopControl region11,0471,047 bp–38.5%
tRNA-PheTransfer RNA1,0481,11770 bp+–
12S rRNARibosomal RNA1,1182,076959 bp+40.0%
tRNA-ValTransfer RNA2,0772,14468 bp+–
16S rRNARibosomal RNA2,1453,7141,570 bp+37.4%
tRNA-Leu (UUR)Transfer RNA3,7153,78975 bp+–
ND1Protein-coding gene3,7924,746955 bp+42.3%
tRNA-IleTransfer RNA4,7474,81569 bp+–
tRNA-GlnTransfer RNA4,8134,88573 bp−–
tRNA-MetTransfer RNA4,8874,95670 bp+–
ND2Protein-coding gene4,9575,9981,042 bp+36.2%
tRNA-TrpTransfer RNA5,9996,06668 bp+–
tRNA-AlaTransfer RNA6,0736,14169 bp−–
tRNA-AsnTransfer RNA6,1436,21775 bp−–
tRNA-CysTransfer RNA6,2496,31769 bp−–
tRNA-TyrTransfer RNA6,3176,38266 bp−–
COX1Protein-coding gene6,3847,9281,545 bp+41.2%
tRNA-Ser (UCN)Transfer RNA7,9328,00069 bp−–
tRNA-AspTransfer RNA8,0088,07568 bp+–
COX2Protein-coding gene8,0768,757682 bp+38.0%
tRNA-LysTransfer RNA8,7588,82467 bp+–
ATP8Protein-coding gene8,8269,029204 bp+32.4%
ATP6Protein-coding gene8,9879,667681 bp+38.9%
COX3Protein-coding gene9,66710,450784 bp+42.6%
tRNA-GlyTransfer RNA10,45110,51969 bp+–
ND3Protein-coding gene10,52010,865346 bp+39.6%
tRNA-ArgTransfer RNA10,86710,93569 bp+–
ND4LProtein-coding gene10,93611,232297 bp+36.4%
ND4Protein-coding gene11,22612,6031,378 bp+39.4%
tRNA-HisTransfer RNA12,60412,67269 bp+–
tRNA-Ser (AGY)Transfer RNA12,67312,73159 bp+–
tRNA-Leu (CUN)Transfer RNA12,73212,80170 bp+–
ND5Protein-coding gene12,80214,6221,821 bp+38.5%
ND6Protein-coding gene14,60615,133528 bp−34.7%
tRNA-GluTransfer RNA15,13415,20269 bp−–
CYTBProtein-coding gene15,20716,3461,140 bp+42.3%
tRNA-ThrTransfer RNA16,34716,41569 bp+–
tRNA-ProTransfer RNA16,41516,47965 bp−–

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