Sylvia atricapilla
Blackcap
GC content
44.46%
Whole genome
Non-coding
2,451 bp
D-loop 2,367 bp
Where Blackcap sits among 2,335 species
Whole-genome GC content against maximum lifespan. Blackcap has the 1,321st longest lifespan of them.
- This species
- Other birds
- Other classes
Base composition
Whole genome17,937 bp
- GC skew (G − C) / (G + C)
- −0.355
- AT skew (A − T) / (A + T)
- +0.091
Life history
- Maximum lifespan
- 13.8 years
- Adult weight
- 16.7 g
- Female sexual maturity
- 365 days
- Male sexual maturity
- 365 days
- Postnatal growth rate
- 0.353 per day
Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 01266)
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- Updated in build 2
- In the database since
- build 1 (2015-07-01)
- Last changed
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome17,937 bp
Protein-coding11,376 bp
12S rRNA976 bp
16S rRNA1,599 bp
All tRNA1,544 bp
D-loop2,367 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 978 bp | 45.19% | −0.412 | +0.022 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,040 bp | 42.98% | −0.526 | +0.113 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 46.10% | −0.292 | +0.060 | |||||
| COX2Cytochrome c oxidase subunit II | 684 bp | 46.20% | −0.373 | +0.109 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 41.67% | −0.771 | +0.143 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 42.11% | −0.535 | +0.116 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 46.43% | −0.330 | +0.019 | |||||
| ND3NADH dehydrogenase subunit 3 | 350 bp | 44.86% | −0.427 | −0.036 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 48.15% | −0.441 | +0.078 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,378 bp | 43.40% | −0.522 | +0.133 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,818 bp | 42.46% | −0.456 | +0.128 | |||||
| ND6NADH dehydrogenase subunit 6 | 519 bp | 46.05% | −0.598 | +0.507 | |||||
| CYTBCytochrome b | 1,142 bp | 47.37% | −0.427 | +0.012 | |||||
| 12S rRNA12S ribosomal RNA | 976 bp | 48.98% | −0.100 | +0.189 | |||||
| 16S rRNA16S ribosomal RNA | 1,599 bp | 43.03% | −0.078 | +0.232 | |||||
| D-loopControl region (D-loop) | 2,367 bp | 44.02% | −0.349 | −0.102 |
Codon usage
Counts per codon, darker is more frequent3,795 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F5.7%
UUU48
UUC170
Leu L17.3%
UUA85
UUG19
CUU70
CUC102
CUA334
CUG47
Ile I7.9%
AUU96
AUC203
Met M4.5%
AUA133
AUG37
Val V5.0%
GUU37
GUC51
GUA88
GUG14
Ser S7.3%
UCU56
UCC77
UCA89
UCG7
AGU7
AGC42
Pro P5.9%
CCU40
CCC67
CCA108
CCG8
Thr T8.7%
ACU65
ACC122
ACA140
ACG5
Ala A8.0%
GCU64
GCC135
GCA102
GCG1
Tyr Y3.0%
UAU24
UAC88
His H2.8%
CAU32
CAC74
Gln Q2.5%
CAA81
CAG12
Asn N3.6%
AAU26
AAC111
Lys K2.3%
AAA78
AAG9
Asp D1.8%
GAU20
GAC49
Glu E2.3%
GAA70
GAG17
Cys C0.8%
UGU8
UGC21
Trp W2.8%
UGA94
UGG12
Arg R1.9%
CGU8
CGC16
CGA43
CGG4
Gly G5.8%
GGU35
GGC63
GGA95
GGG28
Stop 0.2%
UAA5
UAG0
AGA2
AGG1
Genome map
39 annotated features in NC_010228.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop2
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (44.5%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 39 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 70 | 70 bp | + | – |
| 12S rRNA | Ribosomal RNA | 71 | 1,046 | 976 bp | + | 49.0% |
| tRNA-Val | Transfer RNA | 1,047 | 1,116 | 70 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,118 | 2,716 | 1,599 bp | + | 43.0% |
| tRNA-Leu (UUR) | Transfer RNA | 2,717 | 2,791 | 75 bp | + | – |
| ND1 | Protein-coding gene | 2,808 | 3,785 | 978 bp | + | 45.2% |
| tRNA-Ile | Transfer RNA | 3,793 | 3,865 | 73 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,872 | 3,942 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,942 | 4,010 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,011 | 5,050 | 1,040 bp | + | 43.0% |
| tRNA-Trp | Transfer RNA | 5,051 | 5,120 | 70 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,122 | 5,190 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,201 | 5,273 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,274 | 5,340 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,340 | 5,410 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,412 | 6,962 | 1,551 bp | + | 46.1% |
| tRNA-Ser (UCN) | Transfer RNA | 6,954 | 7,026 | 73 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,032 | 7,100 | 69 bp | + | – |
| COX2 | Protein-coding gene | 7,106 | 7,789 | 684 bp | + | 46.2% |
| tRNA-Lys | Transfer RNA | 7,791 | 7,860 | 70 bp | + | – |
| ATP8 | Protein-coding gene | 7,862 | 8,029 | 168 bp | + | 41.7% |
| ATP6 | Protein-coding gene | 8,020 | 8,703 | 684 bp | + | 42.1% |
| COX3 | Protein-coding gene | 8,715 | 9,498 | 784 bp | + | 46.4% |
| tRNA-Gly | Transfer RNA | 9,499 | 9,567 | 69 bp | + | – |
| ND3 | Protein-coding gene | 9,568 | 9,917 | 350 bp | + | 44.9% |
| tRNA-Arg | Transfer RNA | 9,918 | 9,987 | 70 bp | + | – |
| ND4L | Protein-coding gene | 9,989 | 10,285 | 297 bp | + | 48.2% |
| ND4 | Protein-coding gene | 10,279 | 11,656 | 1,378 bp | + | 43.4% |
| tRNA-His | Transfer RNA | 11,657 | 11,726 | 70 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,729 | 11,792 | 64 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,793 | 11,863 | 71 bp | + | – |
| ND5 | Protein-coding gene | 11,864 | 13,681 | 1,818 bp | + | 42.5% |
| CYTB | Protein-coding gene | 13,690 | 14,831 | 1,142 bp | + | 47.4% |
| tRNA-Thr | Transfer RNA | 14,832 | 14,901 | 70 bp | + | – |
| D-loop | Control region | 14,902 | 16,008 | 1,107 bp | – | 44.0% |
| tRNA-Pro | Transfer RNA | 16,009 | 16,078 | 70 bp | − | – |
| ND6 | Protein-coding gene | 16,087 | 16,605 | 519 bp | − | 46.1% |
| tRNA-Glu | Transfer RNA | 16,606 | 16,677 | 72 bp | − | – |
| D-loop | Control region | 16,678 | 17,937 | 1,260 bp | – | 44.0% |