Triaenodon obesus

Whitetip reef shark

Maximum lifespan

25 yr

AnAge record

mtDNA size

16,700 bp

RefSeq NC_026287.1

GC content

38.97%

Whole genome

Non-coding

1,120 bp

D-loop 1,064 bp

Where Whitetip reef shark sits among 2,335 species

Whole-genome GC content against maximum lifespan. Whitetip reef shark has the 631st longest lifespan of them.

This species
Other sharks and rays
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,700 bp

GC skew (G − C) / (G + C): −0.323
AT skew (A − T) / (A + T): +0.028

Life history

Maximum lifespan: 25 years
Adult weight: 10.1 kg
Female sexual maturity: 8 years

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 01771)

About this record

Lifespan source: AnAge build 15
Based on: an animal in the wild
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Unchanged since build 1
In the database since: build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome16,700 bp

Protein-coding11,407 bp

12S rRNA953 bp

16S rRNA1,669 bp

All tRNA1,551 bp

D-loop1,064 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Triaenodon obesus genes

ND1NADH dehydrogenase subunit 1	975 bp	29.9%	30.1%	11.0%	29.0%	40.00%	−0.451	−0.002
ND2NADH dehydrogenase subunit 2	1,045 bp	31.6%	28.6%	9.0%	30.8%	39.81%	−0.548	+0.049
COX1Cytochrome c oxidase subunit I	1,557 bp	27.6%	34.7%	15.5%	22.3%	37.77%	−0.180	−0.115
COX2Cytochrome c oxidase subunit II	691 bp	32.0%	30.4%	14.5%	23.2%	37.63%	−0.231	+0.026
ATP8ATP synthase F0 subunit 8	168 bp	39.3%	32.7%	5.4%	22.6%	27.98%	−0.617	+0.091
ATP6ATP synthase F0 subunit 6	684 bp	31.4%	31.6%	9.8%	27.2%	36.99%	−0.470	−0.002
COX3Cytochrome c oxidase subunit III	786 bp	27.7%	30.8%	15.9%	25.6%	41.48%	−0.233	−0.052
ND3NADH dehydrogenase subunit 3	349 bp	26.6%	32.4%	13.5%	27.5%	40.97%	−0.343	−0.097
ND4LNADH dehydrogenase subunit 4L	297 bp	24.9%	32.0%	12.1%	31.0%	43.10%	−0.438	−0.124
ND4NADH dehydrogenase subunit 4	1,381 bp	30.0%	30.3%	10.7%	29.0%	39.75%	−0.461	−0.005
ND5NADH dehydrogenase subunit 5	1,830 bp	31.0%	28.2%	10.1%	30.7%	40.82%	−0.505	+0.047
ND6NADH dehydrogenase subunit 6	522 bp	42.5%	19.0%	7.1%	31.4%	38.51%	−0.632	+0.383
CYTBCytochrome b	1,145 bp	28.1%	31.8%	12.1%	28.0%	40.09%	−0.399	−0.061
12S rRNA12S ribosomal RNA	953 bp	34.5%	23.7%	18.2%	23.6%	41.76%	−0.131	+0.186
16S rRNA16S ribosomal RNA	1,669 bp	36.1%	26.6%	16.5%	20.9%	37.33%	−0.117	+0.151
D-loopControl region (D-loop)	1,064 bp	31.5%	35.5%	13.7%	19.3%	32.99%	−0.168	−0.060

Codon usage

Counts per codon, darker is more frequent

Gene

3,808 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.2%

UUU116

UUC120

Leu L17.4%

UUA181

UUG17

CUU124

CUC144

CUA191

CUG6

Ile I9.1%

AUU185

AUC163

Met M4.4%

AUA141

AUG28

Val V4.4%

GUU60

GUC33

GUA70

GUG6

Ser S7.2%

UCU51

UCC61

UCA102

UCG3

AGU24

AGC33

Pro P5.6%

CCU57

CCC49

CCA105

CCG3

Thr T7.5%

ACU71

ACC90

ACA123

ACG1

Ala A7.2%

GCU90

GCC96

GCA86

GCG3

Tyr Y3.0%

UAU75

UAC40

His H2.8%

CAU44

CAC63

Gln Q2.5%

CAA90

CAG4

Asn N3.9%

AAU50

AAC100

Lys K2.2%

AAA79

AAG5

Asp D1.9%

GAU31

GAC41

Glu E2.6%

GAA90

GAG8

Cys C0.6%

UGU12

UGC12

Trp W3.2%

UGA114

UGG8

Arg R1.9%

CGU15

CGC12

CGA44

CGG1

Gly G6.0%

GGU69

GGC46

GGA95

GGG19

Stop 0.2%

UAA7

UAG0

AGA0

AGG1

Genome map

38 annotated features in NC_026287.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (39.0%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Triaenodon obesus (NC_026287.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	69	69 bp	+	–
12S rRNA	Ribosomal RNA	70	1,022	953 bp	+	41.8%
tRNA-Val	Transfer RNA	1,023	1,094	72 bp	+	–
16S rRNA	Ribosomal RNA	1,095	2,763	1,669 bp	+	37.3%
tRNA-Leu (UUR)	Transfer RNA	2,764	2,838	75 bp	+	–
ND1	Protein-coding gene	2,839	3,813	975 bp	+	40.0%
tRNA-Ile	Transfer RNA	3,814	3,883	70 bp	+	–
tRNA-Gln	Transfer RNA	3,885	3,957	73 bp	−	–
tRNA-Met	Transfer RNA	3,957	4,025	69 bp	+	–
ND2	Protein-coding gene	4,026	5,070	1,045 bp	+	39.8%
tRNA-Trp	Transfer RNA	5,071	5,141	71 bp	+	–
tRNA-Ala	Transfer RNA	5,143	5,211	69 bp	−	–
tRNA-Asn	Transfer RNA	5,212	5,284	73 bp	−	–
tRNA-Cys	Transfer RNA	5,320	5,387	68 bp	−	–
tRNA-Tyr	Transfer RNA	5,389	5,457	69 bp	−	–
COX1	Protein-coding gene	5,459	7,015	1,557 bp	+	37.8%
tRNA-Ser (UCN)	Transfer RNA	7,016	7,086	71 bp	−	–
tRNA-Asp	Transfer RNA	7,090	7,159	70 bp	+	–
COX2	Protein-coding gene	7,167	7,857	691 bp	+	37.6%
tRNA-Lys	Transfer RNA	7,858	7,931	74 bp	+	–
ATP8	Protein-coding gene	7,933	8,100	168 bp	+	28.0%
ATP6	Protein-coding gene	8,091	8,774	684 bp	+	37.0%
COX3	Protein-coding gene	8,774	9,559	786 bp	+	41.5%
tRNA-Gly	Transfer RNA	9,562	9,631	70 bp	+	–
ND3	Protein-coding gene	9,632	9,980	349 bp	+	41.0%
tRNA-Arg	Transfer RNA	9,981	10,050	70 bp	+	–
ND4L	Protein-coding gene	10,051	10,347	297 bp	+	43.1%
ND4	Protein-coding gene	10,341	11,721	1,381 bp	+	39.8%
tRNA-His	Transfer RNA	11,722	11,790	69 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,791	11,857	67 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,858	11,929	72 bp	+	–
ND5	Protein-coding gene	11,930	13,759	1,830 bp	+	40.8%
ND6	Protein-coding gene	13,755	14,276	522 bp	−	38.5%
tRNA-Glu	Transfer RNA	14,277	14,346	70 bp	−	–
CYTB	Protein-coding gene	14,349	15,493	1,145 bp	+	40.1%
tRNA-Thr	Transfer RNA	15,494	15,565	72 bp	+	–
tRNA-Pro	Transfer RNA	15,568	15,636	69 bp	−	–
D-loop	Control region	15,637	16,700	1,064 bp	–	33.0%