Triturus carnifex
Italian crested newt
GC content
41.46%
Whole genome
Non-coding
1,207 bp
D-loop 736 bp
Where Italian crested newt sits among 2,335 species
Whole-genome GC content against maximum lifespan. Italian crested newt has the 1,494th longest lifespan of them.
- This species
- Other amphibians
- Other classes
Base composition
Whole genome16,560 bp
- GC skew (G − C) / (G + C)
- −0.237
- AT skew (A − T) / (A + T)
- +0.070
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- Unchanged since build 1
- In the database since
- build 1 (2015-07-01)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,560 bp
Protein-coding11,339 bp
12S rRNA924 bp
16S rRNA1,559 bp
All tRNA1,531 bp
D-loop736 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 967 bp | 39.50% | −0.230 | −0.019 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,032 bp | 40.21% | −0.388 | +0.096 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 45.33% | −0.152 | −0.075 | |||||
| COX2Cytochrome c oxidase subunit II | 688 bp | 42.44% | −0.205 | +0.111 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 34.52% | −0.414 | +0.236 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 44.01% | −0.402 | +0.018 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 45.03% | −0.218 | −0.044 | |||||
| ND3NADH dehydrogenase subunit 3 | 348 bp | 45.40% | −0.278 | −0.084 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 41.41% | −0.252 | +0.046 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,378 bp | 42.60% | −0.332 | +0.024 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,815 bp | 39.84% | −0.286 | +0.011 | |||||
| ND6NADH dehydrogenase subunit 6 | 519 bp | 45.09% | −0.436 | +0.516 | |||||
| CYTBCytochrome b | 1,141 bp | 43.30% | −0.324 | −0.017 | |||||
| 12S rRNA12S ribosomal RNA | 924 bp | 43.62% | −0.102 | +0.271 | |||||
| 16S rRNA16S ribosomal RNA | 1,559 bp | 36.56% | −0.056 | +0.248 | |||||
| D-loopControl region (D-loop) | 736 bp | 35.87% | −0.152 | −0.047 |
Codon usage
Counts per codon, darker is more frequent3,789 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.1%
UUU152
UUC81
Leu L16.3%
UUA117
UUG32
CUU114
CUC89
CUA193
CUG72
Ile I7.4%
AUU174
AUC108
Met M6.0%
AUA167
AUG61
Val V5.4%
GUU52
GUC45
GUA82
GUG24
Ser S7.8%
UCU70
UCC43
UCA111
UCG14
AGU8
AGC48
Pro P5.4%
CCU42
CCC41
CCA99
CCG21
Thr T7.9%
ACU51
ACC82
ACA131
ACG35
Ala A7.6%
GCU47
GCC120
GCA107
GCG13
Tyr Y2.8%
UAU55
UAC51
His H2.6%
CAU16
CAC83
Gln Q2.5%
CAA76
CAG19
Asn N3.6%
AAU42
AAC95
Lys K2.3%
AAA75
AAG13
Asp D1.9%
GAU22
GAC49
Glu E2.4%
GAA64
GAG28
Cys C0.9%
UGU10
UGC23
Trp W3.0%
UGA87
UGG26
Arg R1.9%
CGU1
CGC5
CGA57
CGG9
Gly G6.0%
GGU18
GGC71
GGA71
GGG69
Stop 0.2%
UAA4
UAG3
AGA1
AGG0
Genome map
38 annotated features in NC_015788.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (41.5%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 992 | 924 bp | + | 43.6% |
| tRNA-Val | Transfer RNA | 996 | 1,064 | 69 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,065 | 2,623 | 1,559 bp | + | 36.6% |
| tRNA-Leu (UUR) | Transfer RNA | 2,624 | 2,698 | 75 bp | + | – |
| ND1 | Protein-coding gene | 2,699 | 3,665 | 967 bp | + | 39.5% |
| tRNA-Ile | Transfer RNA | 3,666 | 3,738 | 73 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,739 | 3,808 | 70 bp | − | – |
| tRNA-Met | Transfer RNA | 3,809 | 3,877 | 69 bp | + | – |
| ND2 | Protein-coding gene | 3,878 | 4,909 | 1,032 bp | + | 40.2% |
| tRNA-Trp | Transfer RNA | 4,917 | 4,985 | 69 bp | + | – |
| tRNA-Ala | Transfer RNA | 4,987 | 5,055 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,056 | 5,127 | 72 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,161 | 5,226 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,227 | 5,294 | 68 bp | − | – |
| COX1 | Protein-coding gene | 5,296 | 6,846 | 1,551 bp | + | 45.3% |
| tRNA-Ser (UCN) | Transfer RNA | 6,847 | 6,917 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 6,919 | 6,987 | 69 bp | + | – |
| COX2 | Protein-coding gene | 6,989 | 7,676 | 688 bp | + | 42.4% |
| tRNA-Lys | Transfer RNA | 7,677 | 7,750 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,751 | 7,918 | 168 bp | + | 34.5% |
| ATP6 | Protein-coding gene | 7,909 | 8,592 | 684 bp | + | 44.0% |
| COX3 | Protein-coding gene | 8,592 | 9,375 | 784 bp | + | 45.0% |
| tRNA-Gly | Transfer RNA | 9,376 | 9,444 | 69 bp | + | – |
| ND3 | Protein-coding gene | 9,445 | 9,792 | 348 bp | + | 45.4% |
| tRNA-Arg | Transfer RNA | 9,793 | 9,857 | 65 bp | + | – |
| ND4L | Protein-coding gene | 9,860 | 10,156 | 297 bp | + | 41.4% |
| ND4 | Protein-coding gene | 10,150 | 11,527 | 1,378 bp | + | 42.6% |
| tRNA-His | Transfer RNA | 11,528 | 11,597 | 70 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,598 | 11,665 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,667 | 11,736 | 70 bp | + | – |
| ND5 | Protein-coding gene | 11,738 | 13,552 | 1,815 bp | + | 39.8% |
| ND6 | Protein-coding gene | 13,538 | 14,056 | 519 bp | − | 45.1% |
| tRNA-Glu | Transfer RNA | 14,057 | 14,124 | 68 bp | − | – |
| CYTB | Protein-coding gene | 14,126 | 15,266 | 1,141 bp | + | 43.3% |
| tRNA-Thr | Transfer RNA | 15,267 | 15,334 | 68 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,754 | 15,824 | 71 bp | − | – |
| D-loop | Control region | 15,825 | 16,560 | 736 bp | – | 35.9% |