MitoAge

Triturus cristatus

Northern crested newt

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Maximum lifespan
28 yr
AnAge record
mtDNA size
16,564 bp
RefSeq NC_015790.1
GC content
41.71%
Whole genome
Non-coding
1,209 bp
D-loop 736 bp

Where Northern crested newt sits among 2,335 species

Whole-genome GC content against maximum lifespan. Northern crested newt has the 515th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Northern crested newt
  • This species
  • Other amphibians
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,564 bp
GC skew (G − C) / (G + C)
−0.226
AT skew (A − T) / (A + T)
+0.067

Life history

Maximum lifespan
28 years
Gestation or incubation
16 days
Litter or clutch size
225

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 00204)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,564 bp
Protein-coding11,342 bp
12S rRNA926 bp
16S rRNA1,558 bp
All tRNA1,529 bp
D-loop736 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1967 bp28.6%30.6%15.6%25.1%40.75%−0.234−0.033
ND2NADH dehydrogenase subunit 21,035 bp31.5%26.1%14.0%28.4%42.42%−0.339+0.094
COX1Cytochrome c oxidase subunit I1,551 bp25.9%29.3%18.6%26.2%44.87%−0.170−0.062
COX2Cytochrome c oxidase subunit II688 bp31.8%26.0%16.4%25.7%42.15%−0.221+0.101
ATP8ATP synthase F0 subunit 8168 bp39.9%23.8%10.7%25.6%36.31%−0.410+0.252
ATP6ATP synthase F0 subunit 6684 bp28.4%28.5%13.2%30.0%43.13%−0.390−0.003
COX3Cytochrome c oxidase subunit III784 bp26.0%29.3%18.0%26.7%44.64%−0.194−0.060
ND3NADH dehydrogenase subunit 3348 bp25.9%29.6%15.2%29.3%44.54%−0.316−0.067
ND4LNADH dehydrogenase subunit 4L297 bp31.0%29.6%15.5%23.9%39.39%−0.214+0.022
ND4NADH dehydrogenase subunit 41,378 bp29.0%28.6%14.7%27.7%42.45%−0.306+0.006
ND5NADH dehydrogenase subunit 51,815 bp31.1%28.8%14.2%25.9%40.11%−0.291+0.040
ND6NADH dehydrogenase subunit 6519 bp40.5%14.6%13.7%31.2%44.89%−0.391+0.469
CYTBCytochrome b1,141 bp27.3%29.0%15.4%28.3%43.73%−0.295−0.031
12S rRNA12S ribosomal RNA926 bp36.1%20.5%20.2%23.2%43.41%−0.070+0.275
16S rRNA16S ribosomal RNA1,558 bp39.0%23.9%17.8%19.3%37.10%−0.042+0.239
D-loopControl region (D-loop)736 bp29.9%33.7%15.1%21.3%36.41%−0.172−0.060

Codon usage

Counts per codon, darker is more frequent

3,790 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.1%
UUU147
UUC84
Leu L16.2%
UUA117
UUG27
CUU109
CUC97
CUA189
CUG75
Ile I7.5%
AUU177
AUC107
Met M6.0%
AUA167
AUG62
Val V5.5%
GUU51
GUC47
GUA79
GUG31
Ser S7.7%
UCU61
UCC50
UCA104
UCG18
AGU10
AGC47
Pro P5.4%
CCU47
CCC37
CCA96
CCG23
Thr T7.9%
ACU45
ACC80
ACA146
ACG27
Ala A7.7%
GCU47
GCC126
GCA104
GCG13
Tyr Y2.9%
UAU57
UAC53
His H2.5%
CAU23
CAC73
Gln Q2.5%
CAA75
CAG19
Asn N3.5%
AAU43
AAC91
Lys K2.4%
AAA70
AAG21
Asp D1.9%
GAU25
GAC48
Glu E2.4%
GAA63
GAG29
Cys C0.8%
UGU9
UGC23
Trp W3.0%
UGA82
UGG31
Arg R1.9%
CGU5
CGC4
CGA58
CGG6
Gly G6.0%
GGU16
GGC70
GGA73
GGG68
Stop 0.2%
UAA5
UAG1
AGA2
AGG0

Genome map

38 annotated features in NC_015790.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (41.7%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA16868 bp+–
12S rRNARibosomal RNA69994926 bp+43.4%
tRNA-ValTransfer RNA9981,06669 bp+–
16S rRNARibosomal RNA1,0672,6241,558 bp+37.1%
tRNA-Leu (UUR)Transfer RNA2,6252,69975 bp+–
ND1Protein-coding gene2,7003,666967 bp+40.7%
tRNA-IleTransfer RNA3,6673,73973 bp+–
tRNA-GlnTransfer RNA3,7403,80970 bp−–
tRNA-MetTransfer RNA3,8103,87869 bp+–
ND2Protein-coding gene3,8794,9131,035 bp+42.4%
tRNA-TrpTransfer RNA4,9184,98669 bp+–
tRNA-AlaTransfer RNA4,9885,05669 bp−–
tRNA-AsnTransfer RNA5,0575,12872 bp−–
tRNA-CysTransfer RNA5,1625,22766 bp−–
tRNA-TyrTransfer RNA5,2285,29568 bp−–
COX1Protein-coding gene5,2976,8471,551 bp+44.9%
tRNA-Ser (UCN)Transfer RNA6,8486,91871 bp−–
tRNA-AspTransfer RNA6,9206,98869 bp+–
COX2Protein-coding gene6,9907,677688 bp+42.2%
tRNA-LysTransfer RNA7,6787,75174 bp+–
ATP8Protein-coding gene7,7527,919168 bp+36.3%
ATP6Protein-coding gene7,9108,593684 bp+43.1%
COX3Protein-coding gene8,5939,376784 bp+44.6%
tRNA-GlyTransfer RNA9,3779,44569 bp+–
ND3Protein-coding gene9,4469,793348 bp+44.5%
tRNA-ArgTransfer RNA9,7949,85865 bp+–
ND4LProtein-coding gene9,86110,157297 bp+39.4%
ND4Protein-coding gene10,15111,5281,378 bp+42.5%
tRNA-HisTransfer RNA11,52911,59668 bp+–
tRNA-Ser (AGY)Transfer RNA11,59711,66468 bp+–
tRNA-Leu (CUN)Transfer RNA11,66611,73570 bp+–
ND5Protein-coding gene11,73713,5511,815 bp+40.1%
ND6Protein-coding gene13,53714,055519 bp−44.9%
tRNA-GluTransfer RNA14,05614,12368 bp−–
CYTBProtein-coding gene14,12515,2651,141 bp+43.7%
tRNA-ThrTransfer RNA15,26615,33368 bp+–
tRNA-ProTransfer RNA15,75815,82871 bp−–
D-loopControl region15,82916,564736 bp–36.4%

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