Triturus marmoratus

Marbled newt

Maximum lifespan

25 yr

AnAge record

mtDNA size

16,546 bp

RefSeq NC_015795.1

GC content

40.84%

Whole genome

Non-coding

1,189 bp

D-loop 735 bp

Where Marbled newt sits among 2,335 species

Whole-genome GC content against maximum lifespan. Marbled newt has the 628th longest lifespan of them.

This species
Other amphibians
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,546 bp

GC skew (G − C) / (G + C): −0.261
AT skew (A − T) / (A + T): +0.079

Life history

Maximum lifespan: 25 years
Female sexual maturity: 4 years
Male sexual maturity: 4 years

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 00205)

About this record

Lifespan source: AnAge build 15
Based on: an animal in captivity
Data quality: acceptable, small sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Unchanged since build 1
In the database since: build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome16,546 bp

Protein-coding11,346 bp

12S rRNA924 bp

16S rRNA1,559 bp

All tRNA1,528 bp

D-loop735 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Triturus marmoratus genes

ND1NADH dehydrogenase subunit 1	967 bp	29.9%	30.0%	14.7%	25.4%	40.12%	−0.268	−0.002
ND2NADH dehydrogenase subunit 2	1,039 bp	33.0%	26.2%	12.0%	28.8%	40.81%	−0.410	+0.115
COX1Cytochrome c oxidase subunit I	1,551 bp	25.7%	29.9%	18.5%	25.9%	44.36%	−0.166	−0.075
COX2Cytochrome c oxidase subunit II	688 bp	33.4%	25.4%	15.0%	26.2%	41.13%	−0.272	+0.136
ATP8ATP synthase F0 subunit 8	168 bp	42.3%	24.4%	7.7%	25.6%	33.33%	−0.536	+0.268
ATP6ATP synthase F0 subunit 6	684 bp	28.9%	28.7%	13.0%	29.4%	42.40%	−0.386	+0.005
COX3Cytochrome c oxidase subunit III	784 bp	27.4%	29.2%	17.0%	26.4%	43.37%	−0.218	−0.032
ND3NADH dehydrogenase subunit 3	348 bp	27.3%	29.6%	13.8%	29.3%	43.10%	−0.360	−0.040
ND4LNADH dehydrogenase subunit 4L	297 bp	32.0%	25.6%	15.2%	27.3%	42.42%	−0.286	+0.111
ND4NADH dehydrogenase subunit 4	1,378 bp	29.2%	27.9%	13.9%	29.0%	42.82%	−0.353	+0.023
ND5NADH dehydrogenase subunit 5	1,815 bp	31.7%	29.0%	13.7%	25.6%	39.28%	−0.304	+0.044
ND6NADH dehydrogenase subunit 6	519 bp	43.0%	14.8%	12.3%	29.9%	42.20%	−0.416	+0.487
CYTBCytochrome b	1,141 bp	28.1%	30.1%	13.4%	28.3%	41.72%	−0.357	−0.035
12S rRNA12S ribosomal RNA	924 bp	36.4%	20.7%	18.9%	24.0%	42.97%	−0.118	+0.275
16S rRNA16S ribosomal RNA	1,559 bp	39.3%	24.2%	17.0%	19.5%	36.50%	−0.069	+0.238
D-loopControl region (D-loop)	735 bp	29.3%	34.0%	16.2%	20.5%	36.74%	−0.119	−0.075

Codon usage

Counts per codon, darker is more frequent

Gene

3,791 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.1%

UUU152

UUC79

Leu L16.2%

UUA132

UUG30

CUU102

CUC101

CUA202

CUG49

Ile I7.6%

AUU160

AUC128

Met M6.0%

AUA185

AUG43

Val V5.2%

GUU52

GUC35

GUA88

GUG23

Ser S7.8%

UCU66

UCC54

UCA110

UCG10

AGU8

AGC46

Pro P5.3%

CCU42

CCC43

CCA97

CCG19

Thr T7.9%

ACU53

ACC89

ACA139

ACG18

Ala A7.7%

GCU47

GCC121

GCA109

GCG15

Tyr Y2.8%

UAU55

UAC52

His H2.6%

CAU28

CAC69

Gln Q2.5%

CAA81

CAG14

Asn N3.7%

AAU43

AAC97

Lys K2.4%

AAA78

AAG12

Asp D1.8%

GAU24

GAC46

Glu E2.4%

GAA64

GAG28

Cys C0.8%

UGU11

UGC20

Trp W3.0%

UGA89

UGG24

Arg R2.0%

CGU5

CGC6

CGA54

CGG9

Gly G6.0%

GGU20

GGC72

GGA80

GGG56

Stop 0.2%

UAA5

UAG1

AGA1

AGG0

Genome map

38 annotated features in NC_015795.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (40.8%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Triturus marmoratus (NC_015795.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	68	68 bp	+	–
12S rRNA	Ribosomal RNA	69	992	924 bp	+	43.0%
tRNA-Val	Transfer RNA	996	1,064	69 bp	+	–
16S rRNA	Ribosomal RNA	1,065	2,623	1,559 bp	+	36.5%
tRNA-Leu (UUR)	Transfer RNA	2,624	2,698	75 bp	+	–
ND1	Protein-coding gene	2,699	3,665	967 bp	+	40.1%
tRNA-Ile	Transfer RNA	3,666	3,738	73 bp	+	–
tRNA-Gln	Transfer RNA	3,739	3,808	70 bp	−	–
tRNA-Met	Transfer RNA	3,809	3,876	68 bp	+	–
ND2	Protein-coding gene	3,879	4,917	1,039 bp	+	40.8%
tRNA-Trp	Transfer RNA	4,918	4,986	69 bp	+	–
tRNA-Ala	Transfer RNA	4,988	5,056	69 bp	−	–
tRNA-Asn	Transfer RNA	5,057	5,128	72 bp	−	–
tRNA-Cys	Transfer RNA	5,163	5,228	66 bp	−	–
tRNA-Tyr	Transfer RNA	5,229	5,296	68 bp	−	–
COX1	Protein-coding gene	5,298	6,848	1,551 bp	+	44.4%
tRNA-Ser (UCN)	Transfer RNA	6,853	6,923	71 bp	−	–
tRNA-Asp	Transfer RNA	6,925	6,993	69 bp	+	–
COX2	Protein-coding gene	6,995	7,682	688 bp	+	41.1%
tRNA-Lys	Transfer RNA	7,683	7,756	74 bp	+	–
ATP8	Protein-coding gene	7,757	7,924	168 bp	+	33.3%
ATP6	Protein-coding gene	7,915	8,598	684 bp	+	42.4%
COX3	Protein-coding gene	8,598	9,381	784 bp	+	43.4%
tRNA-Gly	Transfer RNA	9,382	9,450	69 bp	+	–
ND3	Protein-coding gene	9,451	9,798	348 bp	+	43.1%
tRNA-Arg	Transfer RNA	9,801	9,865	65 bp	+	–
ND4L	Protein-coding gene	9,868	10,164	297 bp	+	42.4%
ND4	Protein-coding gene	10,158	11,535	1,378 bp	+	42.8%
tRNA-His	Transfer RNA	11,536	11,603	68 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,604	11,671	68 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,673	11,742	70 bp	+	–
ND5	Protein-coding gene	11,744	13,558	1,815 bp	+	39.3%
ND6	Protein-coding gene	13,544	14,062	519 bp	−	42.2%
tRNA-Glu	Transfer RNA	14,063	14,130	68 bp	−	–
CYTB	Protein-coding gene	14,132	15,272	1,141 bp	+	41.7%
tRNA-Thr	Transfer RNA	15,273	15,340	68 bp	+	–
tRNA-Pro	Transfer RNA	15,741	15,811	71 bp	−	–
D-loop	Control region	15,812	16,546	735 bp	–	36.7%