Tylototriton verrucosus

Mandarin salamander

Maximum lifespan

11 yr

AnAge record

mtDNA size

17,100 bp

RefSeq NC_017871.1

GC content

40.66%

Whole genome

Non-coding

1,661 bp

D-loop 737 bp

Where Mandarin salamander sits among 2,335 species

Whole-genome GC content against maximum lifespan. Mandarin salamander has the 1,495th longest lifespan of them.

This species
Other amphibians
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome17,100 bp

GC skew (G − C) / (G + C): −0.296
AT skew (A − T) / (A + T): +0.146

Life history

Maximum lifespan: 11 years
Female sexual maturity: 4 years
Male sexual maturity: 4 years
Litter or clutch size: 43

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 00206)

About this record

Lifespan source: AnAge build 15
Based on: an animal in the wild
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Unchanged since build 1
In the database since: build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome17,100 bp

Protein-coding11,348 bp

12S rRNA926 bp

16S rRNA1,562 bp

All tRNA1,606 bp

D-loop737 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Tylototriton verrucosus genes

ND1NADH dehydrogenase subunit 1	969 bp	34.8%	27.6%	12.5%	25.2%	37.67%	−0.337	+0.116
ND2NADH dehydrogenase subunit 2	1,044 bp	38.2%	23.9%	9.9%	28.0%	37.84%	−0.478	+0.230
COX1Cytochrome c oxidase subunit I	1,551 bp	26.6%	28.5%	17.9%	27.0%	44.87%	−0.201	−0.034
COX2Cytochrome c oxidase subunit II	688 bp	33.0%	25.1%	15.4%	26.5%	41.86%	−0.264	+0.135
ATP8ATP synthase F0 subunit 8	168 bp	43.5%	25.0%	6.5%	25.0%	31.55%	−0.585	+0.270
ATP6ATP synthase F0 subunit 6	684 bp	31.9%	26.6%	12.4%	29.1%	41.52%	−0.401	+0.090
COX3Cytochrome c oxidase subunit III	784 bp	28.3%	25.0%	16.7%	30.0%	46.68%	−0.284	+0.062
ND3NADH dehydrogenase subunit 3	346 bp	28.9%	29.2%	14.2%	27.7%	41.91%	−0.324	−0.005
ND4LNADH dehydrogenase subunit 4L	297 bp	30.3%	27.9%	14.1%	27.6%	41.75%	−0.323	+0.040
ND4NADH dehydrogenase subunit 4	1,378 bp	32.9%	25.0%	12.1%	29.9%	42.02%	−0.423	+0.136
ND5NADH dehydrogenase subunit 5	1,812 bp	34.7%	26.9%	12.1%	26.3%	38.41%	−0.371	+0.127
ND6NADH dehydrogenase subunit 6	519 bp	45.9%	11.4%	10.8%	32.0%	42.78%	−0.496	+0.603
CYTBCytochrome b	1,141 bp	30.7%	26.5%	14.3%	28.6%	42.86%	−0.333	+0.074
12S rRNA12S ribosomal RNA	926 bp	37.9%	19.3%	18.7%	24.1%	42.77%	−0.126	+0.325
16S rRNA16S ribosomal RNA	1,562 bp	40.8%	23.2%	16.0%	20.0%	35.98%	−0.110	+0.274
D-loopControl region (D-loop)	737 bp	28.2%	34.7%	15.6%	21.4%	37.04%	−0.158	−0.103

Codon usage

Counts per codon, darker is more frequent

Gene

3,792 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F5.9%

UUU111

UUC111

Leu L15.8%

UUA112

UUG24

CUU87

CUC95

CUA235

CUG46

Ile I7.9%

AUU146

AUC153

Met M6.6%

AUA198

AUG54

Val V4.9%

GUU48

GUC33

GUA81

GUG22

Ser S7.6%

UCU45

UCC37

UCA146

UCG10

AGU8

AGC44

Pro P5.5%

CCU19

CCC27

CCA140

CCG21

Thr T8.6%

ACU35

ACC90

ACA189

ACG13

Ala A7.1%

GCU37

GCC107

GCA112

GCG14

Tyr Y2.8%

UAU46

UAC60

His H2.5%

CAU20

CAC76

Gln Q2.5%

CAA83

CAG12

Asn N3.9%

AAU43

AAC106

Lys K2.3%

AAA76

AAG13

Asp D1.8%

GAU16

GAC51

Glu E2.5%

GAA76

GAG17

Cys C0.8%

UGU12

UGC19

Trp W2.9%

UGA97

UGG14

Arg R1.9%

CGU3

CGC10

CGA53

CGG7

Gly G5.9%

GGU20

GGC66

GGA95

GGG43

Stop 0.2%

UAA6

UAG1

AGA1

AGG0

Genome map

39 annotated features in NC_017871.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA23
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (40.7%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 39 features as a table

Annotated features of Tylototriton verrucosus (NC_017871.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	69	69 bp	+	–
12S rRNA	Ribosomal RNA	70	995	926 bp	+	42.8%
tRNA-Val	Transfer RNA	996	1,065	70 bp	+	–
16S rRNA	Ribosomal RNA	1,066	2,627	1,562 bp	+	36.0%
tRNA-Leu (UUR)	Transfer RNA	2,628	2,702	75 bp	+	–
ND1	Protein-coding gene	2,703	3,671	969 bp	+	37.7%
tRNA-Ile	Transfer RNA	3,671	3,741	71 bp	+	–
tRNA-Gln	Transfer RNA	3,744	3,813	70 bp	−	–
tRNA-Met	Transfer RNA	3,816	3,885	70 bp	+	–
ND2	Protein-coding gene	3,886	4,929	1,044 bp	+	37.8%
tRNA-Trp	Transfer RNA	4,928	4,996	69 bp	+	–
tRNA-Ala	Transfer RNA	4,998	5,066	69 bp	−	–
tRNA-Asn	Transfer RNA	5,067	5,139	73 bp	−	–
tRNA-Cys	Transfer RNA	5,173	5,238	66 bp	−	–
tRNA-Tyr	Transfer RNA	5,239	5,306	68 bp	−	–
COX1	Protein-coding gene	5,308	6,858	1,551 bp	+	44.9%
tRNA-Ser (UCN)	Transfer RNA	6,859	6,929	71 bp	−	–
tRNA-Asp	Transfer RNA	6,931	7,000	70 bp	+	–
COX2	Protein-coding gene	7,002	7,689	688 bp	+	41.9%
tRNA-Lys	Transfer RNA	7,690	7,762	73 bp	+	–
ATP8	Protein-coding gene	7,764	7,931	168 bp	+	31.6%
ATP6	Protein-coding gene	7,922	8,605	684 bp	+	41.5%
COX3	Protein-coding gene	8,605	9,388	784 bp	+	46.7%
tRNA-Gly	Transfer RNA	9,389	9,458	70 bp	+	–
ND3	Protein-coding gene	9,459	9,804	346 bp	+	41.9%
tRNA-Arg	Transfer RNA	9,805	9,873	69 bp	+	–
ND4L	Protein-coding gene	9,874	10,170	297 bp	+	41.8%
ND4	Protein-coding gene	10,164	11,541	1,378 bp	+	42.0%
tRNA-His	Transfer RNA	11,542	11,609	68 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,610	11,677	68 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,677	11,748	72 bp	+	–
ND5	Protein-coding gene	11,749	13,560	1,812 bp	+	38.4%
ND6	Protein-coding gene	13,546	14,064	519 bp	−	42.8%
tRNA-Glu	Transfer RNA	14,065	14,132	68 bp	−	–
CYTB	Protein-coding gene	14,134	15,274	1,141 bp	+	42.9%
tRNA-Thr	Transfer RNA	15,275	15,342	68 bp	+	–
tRNA-Thr	Transfer RNA	15,714	15,781	68 bp	+	–
tRNA-Pro	Transfer RNA	16,292	16,363	72 bp	+	–
D-loop	Control region	16,364	17,100	737 bp	–	37.0%