Vireo altiloquus
Black-whiskered Vireo
GC content
45.23%
Whole genome
Non-coding
1,696 bp
Including the D-loop
Where Black-whiskered Vireo sits among 2,335 species
Whole-genome GC content against maximum lifespan. Black-whiskered Vireo has the 2,263rd longest lifespan of them.
- This species
- Other birds
- Other classes
Base composition
Whole genome17,193 bp
- GC skew (G − C) / (G + C)
- −0.355
- AT skew (A − T) / (A + T)
- +0.165
Life history
- Maximum lifespan
- 2 years
Lifespan from USGS Bird Banding Laboratory · USGS longevity records
About this record
- Lifespan source
- NABBP Longevity Records v2025.1
- Based on
- an animal in the wild
- Data quality
- acceptable
- Licence
- U.S. Government work
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
- Provisional: the EURING list could not be retrieved, so the USGS record is used.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome17,193 bp
Protein-coding11,381 bp
12S rRNA976 bp
16S rRNA1,607 bp
All tRNA1,545 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 978 bp | 45.71% | −0.396 | +0.058 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,040 bp | 45.10% | −0.514 | +0.110 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 46.42% | −0.275 | +0.126 | |||||
| COX2Cytochrome c oxidase subunit II | 685 bp | 45.84% | −0.363 | +0.170 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 41.67% | −0.657 | +0.286 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 44.59% | −0.502 | +0.156 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 49.17% | −0.342 | +0.118 | |||||
| ND3NADH dehydrogenase subunit 3 | 351 bp | 45.30% | −0.434 | +0.146 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 49.50% | −0.497 | +0.133 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,379 bp | 45.54% | −0.513 | +0.204 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,818 bp | 45.60% | −0.467 | +0.230 | |||||
| ND6NADH dehydrogenase subunit 6 | 519 bp | 47.59% | −0.466 | +0.522 | |||||
| CYTBCytochrome b | 1,143 bp | 45.58% | −0.447 | +0.135 | |||||
| 12S rRNA12S ribosomal RNA | 976 bp | 47.13% | −0.091 | +0.186 | |||||
| 16S rRNA16S ribosomal RNA | 1,607 bp | 43.62% | −0.070 | +0.230 |
Codon usage
Counts per codon, darker is more frequent3,797 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F5.8%
UUU45
UUC175
Leu L16.8%
UUA8
UUG0
CUU35
CUC93
CUA433
CUG69
Ile I7.6%
AUU74
AUC215
Met M4.7%
AUA132
AUG45
Val V5.5%
GUU44
GUC38
GUA104
GUG24
Ser S7.2%
UCU41
UCC72
UCA95
UCG7
AGU8
AGC50
Pro P5.8%
CCU27
CCC57
CCA134
CCG4
Thr T8.4%
ACU49
ACC132
ACA136
ACG2
Ala A8.4%
GCU44
GCC161
GCA107
GCG6
Tyr Y2.9%
UAU25
UAC85
His H2.8%
CAU11
CAC95
Gln Q2.7%
CAA97
CAG4
Asn N3.5%
AAU20
AAC112
Lys K2.3%
AAA80
AAG6
Asp D1.8%
GAU19
GAC48
Glu E2.3%
GAA84
GAG5
Cys C0.7%
UGU3
UGC25
Trp W2.8%
UGA104
UGG2
Arg R1.9%
CGU6
CGC13
CGA48
CGG7
Gly G5.9%
GGU12
GGC58
GGA128
GGG25
Stop 0.2%
UAA6
UAG1
AGA1
AGG1
Genome map
37 annotated features in NC_051016.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (45.2%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 37 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,044 | 976 bp | + | 47.1% |
| tRNA-Val | Transfer RNA | 1,044 | 1,114 | 71 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,115 | 2,721 | 1,607 bp | + | 43.6% |
| tRNA-Leu (UUR) | Transfer RNA | 2,723 | 2,797 | 75 bp | + | – |
| ND1 | Protein-coding gene | 2,807 | 3,784 | 978 bp | + | 45.7% |
| tRNA-Ile | Transfer RNA | 3,791 | 3,864 | 74 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,870 | 3,940 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,940 | 4,008 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,009 | 5,048 | 1,040 bp | + | 45.1% |
| tRNA-Trp | Transfer RNA | 5,049 | 5,118 | 70 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,120 | 5,188 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,199 | 5,271 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,274 | 5,339 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,340 | 5,409 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,411 | 6,961 | 1,551 bp | + | 46.4% |
| tRNA-Ser (UCN) | Transfer RNA | 6,953 | 7,027 | 75 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,033 | 7,101 | 69 bp | + | – |
| COX2 | Protein-coding gene | 7,111 | 7,795 | 685 bp | + | 45.8% |
| tRNA-Lys | Transfer RNA | 7,796 | 7,865 | 70 bp | + | – |
| ATP8 | Protein-coding gene | 7,867 | 8,034 | 168 bp | + | 41.7% |
| ATP6 | Protein-coding gene | 8,025 | 8,708 | 684 bp | + | 44.6% |
| COX3 | Protein-coding gene | 8,716 | 9,500 | 785 bp | + | 49.2% |
| tRNA-Gly | Transfer RNA | 9,500 | 9,568 | 69 bp | + | – |
| ND3 | Protein-coding gene | 9,569 | 9,919 | 351 bp | + | 45.3% |
| tRNA-Arg | Transfer RNA | 9,921 | 9,990 | 70 bp | + | – |
| ND4L | Protein-coding gene | 9,992 | 10,288 | 297 bp | + | 49.5% |
| ND4 | Protein-coding gene | 10,282 | 11,660 | 1,379 bp | + | 45.5% |
| tRNA-His | Transfer RNA | 11,661 | 11,730 | 70 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,731 | 11,795 | 65 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,795 | 11,865 | 71 bp | + | – |
| ND5 | Protein-coding gene | 11,866 | 13,683 | 1,818 bp | + | 45.6% |
| CYTB | Protein-coding gene | 13,692 | 14,834 | 1,143 bp | + | 45.6% |
| tRNA-Thr | Transfer RNA | 14,838 | 14,906 | 69 bp | + | – |
| tRNA-Pro | Transfer RNA | 14,915 | 14,984 | 70 bp | − | – |
| ND6 | Protein-coding gene | 14,994 | 15,512 | 519 bp | − | 47.6% |
| tRNA-Glu | Transfer RNA | 15,514 | 15,585 | 72 bp | − | – |