MitoAge

Zosterops japonicus

Japanese white-eye

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Maximum lifespan
5.1 yr
AnAge record
mtDNA size
17,819 bp
RefSeq NC_059932.1
GC content
45.31%
Whole genome
Non-coding
2,325 bp
D-loop 2,235 bp

Where Japanese white-eye sits among 2,335 species

Whole-genome GC content against maximum lifespan. Japanese white-eye has the 1,979th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Japanese white-eye
  • This species
  • Other birds
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome17,819 bp
GC skew (G − C) / (G + C)
−0.370
AT skew (A − T) / (A + T)
+0.102

Life history

Maximum lifespan
5.1 years
Adult weight
11.3 g
Birth weight
1.1 g
Female sexual maturity
365 days
Male sexual maturity
365 days
Gestation or incubation
11 days
Litter or clutch size
3.5
Litters per year
2

Lifespan from AnAge · AnAge record · other traits from AnAge build 15 (HAGRID 01346)

About this record

Lifespan source
AnAge build 15
Based on
an animal in the wild
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
New in build 2
In the database since
build 2 (2026-11-13)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome17,819 bp
Protein-coding11,378 bp
12S rRNA984 bp
16S rRNA1,599 bp
All tRNA1,542 bp
D-loop2,235 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1978 bp28.2%26.7%13.7%31.4%45.09%−0.392+0.028
ND2NADH dehydrogenase subunit 21,041 bp31.8%24.1%9.6%34.5%44.09%−0.564+0.137
COX1Cytochrome c oxidase subunit I1,551 bp28.2%25.9%16.3%29.5%45.84%−0.288+0.043
COX2Cytochrome c oxidase subunit II684 bp30.6%23.2%15.1%31.1%46.20%−0.348+0.136
ATP8ATP synthase F0 subunit 8168 bp36.3%27.4%6.0%30.4%36.31%−0.672+0.140
ATP6ATP synthase F0 subunit 6684 bp28.2%24.3%10.1%37.4%47.52%−0.575+0.075
COX3Cytochrome c oxidase subunit III784 bp27.0%26.5%15.8%30.6%46.43%−0.319+0.010
ND3NADH dehydrogenase subunit 3350 bp29.4%26.0%12.3%32.3%44.57%−0.449+0.062
ND4LNADH dehydrogenase subunit 4L297 bp25.9%26.9%11.4%35.7%47.14%−0.514−0.019
ND4NADH dehydrogenase subunit 41,378 bp30.4%24.9%11.4%33.3%44.70%−0.490+0.100
ND5NADH dehydrogenase subunit 51,818 bp31.7%23.9%11.6%32.9%44.44%−0.480+0.141
ND6NADH dehydrogenase subunit 6519 bp43.2%10.2%8.3%38.3%46.63%−0.645+0.617
CYTBCytochrome b1,143 bp28.2%26.2%13.6%31.9%45.58%−0.401+0.035
12S rRNA12S ribosomal RNA984 bp30.3%20.9%22.0%26.5%48.62%−0.094+0.183
16S rRNA16S ribosomal RNA1,599 bp34.3%21.1%20.3%24.4%44.65%−0.092+0.238
D-loopControl region (D-loop)2,235 bp25.7%28.2%13.2%32.8%46.06%−0.425−0.047

Codon usage

Counts per codon, darker is more frequent

3,797 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F5.9%
UUU63
UUC161
Leu L17.4%
UUA57
UUG23
CUU69
CUC130
CUA337
CUG45
Ile I7.7%
AUU90
AUC202
Met M4.3%
AUA118
AUG44
Val V5.0%
GUU45
GUC46
GUA78
GUG21
Ser S7.3%
UCU45
UCC79
UCA90
UCG8
AGU9
AGC46
Pro P6.0%
CCU44
CCC56
CCA121
CCG7
Thr T8.8%
ACU72
ACC120
ACA140
ACG3
Ala A8.1%
GCU62
GCC144
GCA90
GCG10
Tyr Y3.0%
UAU25
UAC90
His H2.6%
CAU28
CAC72
Gln Q2.5%
CAA85
CAG9
Asn N3.5%
AAU24
AAC109
Lys K2.2%
AAA77
AAG7
Asp D1.8%
GAU19
GAC51
Glu E2.3%
GAA76
GAG10
Cys C0.8%
UGU10
UGC20
Trp W2.8%
UGA102
UGG5
Arg R1.9%
CGU9
CGC13
CGA46
CGG4
Gly G5.8%
GGU34
GGC63
GGA91
GGG33
Stop 0.3%
UAA6
UAG1
AGA2
AGG1

Genome map

39 annotated features in NC_059932.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop2
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (45.3%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 39 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA16969 bp+–
12S rRNARibosomal RNA701,053984 bp+48.6%
tRNA-ValTransfer RNA1,0541,12370 bp+–
16S rRNARibosomal RNA1,1242,7221,599 bp+44.7%
tRNA-Leu (UUR)Transfer RNA2,7232,79775 bp+–
ND1Protein-coding gene2,8123,789978 bp+45.1%
tRNA-IleTransfer RNA3,7983,87174 bp+–
tRNA-GlnTransfer RNA3,8793,94971 bp−–
tRNA-MetTransfer RNA3,9494,01870 bp+–
ND2Protein-coding gene4,0195,0591,041 bp+44.1%
tRNA-TrpTransfer RNA5,0605,12970 bp+–
tRNA-AlaTransfer RNA5,1315,19969 bp−–
tRNA-AsnTransfer RNA5,2085,27871 bp−–
tRNA-CysTransfer RNA5,2815,34666 bp−–
tRNA-TyrTransfer RNA5,3465,41671 bp−–
COX1Protein-coding gene5,4186,9681,551 bp+45.8%
tRNA-Ser (UCN)Transfer RNA6,9607,03273 bp−–
tRNA-AspTransfer RNA7,0387,10669 bp+–
COX2Protein-coding gene7,1177,800684 bp+46.2%
tRNA-LysTransfer RNA7,8017,86969 bp+–
ATP8Protein-coding gene7,8718,038168 bp+36.3%
ATP6Protein-coding gene8,0298,712684 bp+47.5%
COX3Protein-coding gene8,7199,502784 bp+46.4%
tRNA-GlyTransfer RNA9,5039,57169 bp+–
ND3Protein-coding gene9,5729,921350 bp+44.6%
tRNA-ArgTransfer RNA9,9229,99170 bp+–
ND4LProtein-coding gene9,99310,289297 bp+47.1%
ND4Protein-coding gene10,28311,6601,378 bp+44.7%
tRNA-HisTransfer RNA11,66111,73070 bp+–
tRNA-Ser (AGY)Transfer RNA11,73111,79666 bp+–
tRNA-Leu (CUN)Transfer RNA11,79611,86671 bp+–
ND5Protein-coding gene11,86713,6841,818 bp+44.4%
CYTBProtein-coding gene13,69414,8361,143 bp+45.6%
tRNA-ThrTransfer RNA14,83714,90569 bp+–
D-loopControl region14,90615,9911,086 bp–46.1%
tRNA-ProTransfer RNA15,99316,06270 bp−–
ND6Protein-coding gene16,07716,595519 bp−46.6%
tRNA-GluTransfer RNA16,59716,66973 bp+–
D-loopControl region16,67017,8181,149 bp–46.1%

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