family · mtDNA statistics
Felidae
30 species in 13 genera. Every region of their mitochondrial genomes, side by side.
30
species
40.2%
mean GC, whole genome
SD 0.7, range 39.1–41.4%
16,822
median genome length, bp
Range 16,626–17,153 bp
13
genera
Regions
GC content of each region across Felidae, % of A + C + G + T| Region | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Whole genome | 30 | 40.19% | 0.70 | 39.07%Otocolobus manul | 40.19% | 41.35%Lynx lynx | 0.50 | 0.005 | |
| Protein-coding | 30 | 40.60% | 0.89 | 39.25%Otocolobus manul | 40.52% | 42.23%Lynx lynx | 0.53 | 0.002 | |
| All rRNA | 30 | 40.22% | 0.33 | 39.47%Otocolobus manul | 40.19% | 40.80%Leopardus pardalis | 0.40 | 0.03 | |
| All tRNA | 30 | 36.32% | 0.53 | 35.21%Catopuma temminckii | 36.31% | 37.29%Lynx rufus | 0.31 | 0.1 | |
| 12S rRNA | 30 | 41.77% | 0.51 | 40.85%Lynx lynx | 41.69% | 43.22%Leopardus geoffroyi | −0.04 | 0.82 | |
| 16S rRNA | 30 | 39.28% | 0.44 | 38.30%Otocolobus manul | 39.24% | 40.14%Panthera pardus | 0.50 | 0.005 | |
| D-loop | 30 | 40.97% | 1.11 | 38.92%Leptailurus serval | 41.00% | 44.11%Neofelis nebulosa | −0.15 | 0.42 | |
| ND1 | 30 | 42.69% | 1.20 | 39.85%Otocolobus manul | 42.73% | 44.67%Lynx lynx | 0.37 | 0.04 | |
| ND2 | 30 | 37.67% | 1.29 | 35.51%Prionailurus rubiginosus | 37.52% | 39.64%Neofelis nebulosa | 0.72 | 7.0 × 10⁻⁶ | |
| COX1 | 30 | 41.17% | 1.01 | 39.42%Leptailurus serval | 41.11% | 42.98%Panthera tigris | 0.23 | 0.23 | |
| COX2 | 30 | 40.37% | 1.15 | 37.13%Otocolobus manul | 40.35% | 42.25%Lynx lynx | 0.37 | 0.04 | |
| ATP8 | 30 | 32.12% | 1.56 | 29.90%Catopuma temminckii | 31.62% | 34.80%Lynx lynx | 0.03 | 0.86 | |
| ATP6 | 30 | 40.01% | 1.32 | 37.89%Leptailurus serval | 39.57% | 43.17%Neofelis nebulosa | 0.46 | 0.01 | |
| COX3 | 30 | 43.35% | 1.06 | 41.45%Caracal caracal | 43.24% | 45.15%Panthera onca | 0.43 | 0.02 | |
| ND3 | 30 | 41.84% | 1.18 | 39.77%Leopardus tigrinus | 41.79% | 44.09%Leopardus wiedii | −0.15 | 0.43 | |
| ND4L | 30 | 37.22% | 2.03 | 31.65%Caracal auratus | 37.21% | 41.08%Panthera onca | 0.32 | 0.08 | |
| ND4 | 30 | 39.56% | 1.49 | 37.08%Herpailurus yagouaroundi | 39.66% | 41.94%Lynx lynx | 0.57 | 9.3 × 10⁻⁴ | |
| ND5 | 30 | 40.01% | 0.91 | 38.61%Otocolobus manul | 39.80% | 41.63%Lynx lynx | 0.57 | 0.001 | |
| ND6 | 30 | 38.76% | 0.98 | 37.12%Lynx rufus | 38.64% | 41.29%Panthera tigris | 0.17 | 0.36 | |
| CYTB | 30 | 44.03% | 1.09 | 41.75%Leptailurus serval | 43.90% | 46.23%Lynx lynx | 0.20 | 0.3 |
Genera of Felidae
GC content of the whole genome, % of A + C + G + T| Felis | 5 | 40.06% | 0.30 | 39.55%Felis chaus | 40.17% | 40.33%Felis catus | 0.19 | 0.75 | |
| Panthera | 5 | 41.01% | 0.12 | 40.90%Panthera leo | 40.97% | 41.15%Panthera tigris | −0.01 | 0.99 | |
| Prionailurus | 4 | 39.91% | 0.28 | 39.56%Prionailurus bengalensis | 39.93% | 40.21%Prionailurus planiceps | – | – | |
| Leopardus | 4 | 40.24% | 0.07 | 40.18%Leopardus geoffroyi | 40.22% | 40.34%Leopardus pardalis | – | – | |
| Lynx | 3 | 41.19% | 0.17 | 41.01%Lynx rufus | 41.20% | 41.35%Lynx lynx | – | – | |
| Caracal | 2 | 39.29% | 0.11 | 39.22%Caracal auratus | 39.29% | 39.37%Caracal caracal | – | – | |
| Acinonyx | 1 | 39.37% | – | 39.37%Acinonyx jubatus | 39.37% | 39.37%Acinonyx jubatus | – | – | |
| Catopuma | 1 | 39.74% | – | 39.74%Catopuma temminckii | 39.74% | 39.74%Catopuma temminckii | – | – | |
| Neofelis | 1 | 41.15% | – | 41.15%Neofelis nebulosa | 41.15% | 41.15%Neofelis nebulosa | – | – | |
| Puma | 1 | 39.79% | – | 39.79%Puma concolor | 39.79% | 39.79%Puma concolor | – | – | |
| Leptailurus | 1 | 39.14% | – | 39.14%Leptailurus serval | 39.14% | 39.14%Leptailurus serval | – | – | |
| Otocolobus | 1 | 39.07% | – | 39.07%Otocolobus manul | 39.07% | 39.07%Otocolobus manul | – | – | |
| Herpailurus | 1 | 39.37% | – | 39.37%Herpailurus yagouaroundi | 39.37% | 39.37%Herpailurus yagouaroundi | – | – |
Codon usage
Share of each codon in all 13 protein-coding genes, across FelidaeLoading codon usage…
Every species, region by region
Each region's page lists the value of every species, with the same statistics by class, order or family and a CSV download.
The charts
- Each chart draws the rows of the table under it, in the table's order: sort a column to reorder the chart.Chart sets its axis.
- Distribution: the range (line), mean ± SD (bar), median (tick) and mean (dot). Lengths of the regions are on a log scale.
- Variation: the coefficient of variation, or the SD for the skews, which vary around zero.
- Lifespan r: r with its 95% confidence interval (Fisher z). Lifespan map: r of every parameter in every region at once, bold where the Benjamini–Hochberg q-value over the map is below 0.05.
What the numbers are
- Species: species with the region annotated. SD is the sample standard deviation, CV = SD / mean.
- Base percentages are over A + C + G + T, so GC % + AT % = 100. Skews are on the L strand as deposited in RefSeq: GC skew = (G − C) / (G + C), AT skew = (A − T) / (A + T).
- Min and Max name the species with the extreme value.
Lifespan columns
r is the Pearson correlation of the parameter with log10 maximum lifespan within the group (5 or more species), and p its two-tailed p-value, as on the original MitoAge. They are not corrected for multiple testing or for shared ancestry: the plot shows Benjamini–Hochberg q-values and phylogenetic contrasts.
The original site labelled the base columns with their complements, so its skews have the opposite sign. Seemethods.