family · mtDNA statistics

Mullidae

6 species in 4 genera. Every region of their mitochondrial genomes, side by side.

Group

species

48.0%

mean GC, whole genome

SD 1.3, range 46.3–49.8%

16,663

median genome length, bp

Range 16,535–17,397 bp

genera

Regions

GC content of each region across Mullidae, % of A + C + G + T

Parameter

Chart

GC % of every region
Region
Whole genome	6	47.97%	1.34	0.028	46.30%Upeneus sulphureus	48.07%	49.83%Parupeneus heptacantha	0.00	1
Protein-coding	6	48.85%	1.47	0.030	47.26%Upeneus sulphureus	48.95%	51.22%Parupeneus heptacantha	0.01	0.99
All rRNA	6	47.81%	1.07	0.022	46.61%Mulloidichthys vanicolensis	47.56%	49.20%Parupeneus heptacantha	−0.19	0.71
All tRNA	6	47.06%	0.57	0.012	46.15%Upeneus sulphureus	47.21%	47.65%Upeneus japonicus	0.29	0.58
12S rRNA	6	51.03%	1.45	0.029	49.84%Upeneus japonicus	50.52%	53.56%Parupeneus heptacantha	−0.13	0.81
16S rRNA	6	45.99%	0.94	0.020	44.79%Mulloidichthys vanicolensis	45.88%	47.30%Parupeneus chrysopleuron	−0.23	0.67
D-loop	4	37.94%	2.09	0.055	35.28%Upeneus sulphureus	38.09%	40.29%Mullus surmuletus	–	–
ND1	6	49.93%	1.77	0.035	48.10%Mulloidichthys vanicolensis	49.49%	52.62%Parupeneus heptacantha	−0.05	0.92
ND2	6	49.71%	1.47	0.029	48.13%Mulloidichthys vanicolensis	49.43%	52.29%Parupeneus heptacantha	0.16	0.76
COX1	6	47.53%	1.27	0.027	45.97%Upeneus sulphureus	47.52%	49.58%Parupeneus heptacantha	−0.05	0.93
COX2	6	46.19%	1.70	0.037	44.14%Upeneus sulphureus	45.66%	48.77%Parupeneus heptacantha	−0.22	0.68
ATP8	6	50.20%	2.98	0.059	46.43%Upeneus sulphureus	49.70%	54.76%Parupeneus heptacantha	−0.16	0.77
ATP6	6	47.46%	2.45	0.052	44.44%Upeneus sulphureus	47.33%	51.32%Parupeneus heptacantha	0.08	0.88
COX3	6	50.68%	1.44	0.029	48.15%Mulloidichthys vanicolensis	50.76%	52.36%Parupeneus heptacantha	0.04	0.94
ND3	6	49.90%	2.60	0.052	46.13%Upeneus sulphureus	50.21%	53.14%Parupeneus heptacantha	−0.07	0.9
ND4L	6	50.67%	1.46	0.029	48.82%Upeneus sulphureus	50.67%	53.20%Mullus surmuletus	0.90	0.02
ND4	6	49.72%	1.64	0.033	47.14%Mulloidichthys vanicolensis	50.22%	51.34%Parupeneus heptacantha	−0.24	0.64
ND5	6	48.49%	1.53	0.031	46.93%Upeneus sulphureus	48.40%	51.06%Parupeneus heptacantha	0.09	0.87
ND6	6	49.39%	2.48	0.050	46.55%Mulloidichthys vanicolensis	49.52%	53.26%Parupeneus heptacantha	−0.03	0.96
CYTB	6	48.25%	1.18	0.024	46.71%Mulloidichthys vanicolensis	48.29%	49.96%Parupeneus heptacantha	0.19	0.71

Genera of Mullidae

GC content of the whole genome, % of A + C + G + T

Region

Parameter

Chart

Genera of Mullidae

Upeneus	2	47.08%	1.10	0.023	46.30%Upeneus sulphureus	47.08%	47.86%Upeneus japonicus	–	–
Parupeneus	2	49.36%	0.66	0.013	48.90%Parupeneus chrysopleuron	49.36%	49.83%Parupeneus heptacantha	–	–
Mullus	1	48.28%	–	–	48.28%Mullus surmuletus	48.28%	48.28%Mullus surmuletus	–	–
Mulloidichthys	1	46.65%	–	–	46.65%Mulloidichthys vanicolensis	46.65%	46.65%Mulloidichthys vanicolensis	–	–

Codon usage

Share of each codon in all 13 protein-coding genes, across Mullidae

Gene

Loading codon usage…

Every species, region by region

Each region's page lists the value of every species, with the same statistics by class, order or family and a CSV download.

Whole genome Protein-coding All rRNA All tRNA 12S rRNA 16S rRNA D-loop ND1 ND2 COX1 COX2 ATP8 ATP6 COX3 ND3 ND4L ND4 ND5 ND6 CYTB

Mullidae taxon page All data downloads

The charts

Each chart draws the rows of the table under it, in the table's order: sort a column to reorder the chart.Chart sets its axis.
Distribution: the range (line), mean ± SD (bar), median (tick) and mean (dot). Lengths of the regions are on a log scale.
Variation: the coefficient of variation, or the SD for the skews, which vary around zero.
Lifespan r: r with its 95% confidence interval (Fisher z). Lifespan map: r of every parameter in every region at once, bold where the Benjamini–Hochberg q-value over the map is below 0.05.

What the numbers are

Species: species with the region annotated. SD is the sample standard deviation, CV = SD / mean.
Base percentages are over A + C + G + T, so GC % + AT % = 100. Skews are on the L strand as deposited in RefSeq: GC skew = (G − C) / (G + C), AT skew = (A − T) / (A + T).
Min and Max name the species with the extreme value.

Lifespan columns

r is the Pearson correlation of the parameter with log₁₀ maximum lifespan within the group (5 or more species), and p its two-tailed p-value, as on the original MitoAge. They are not corrected for multiple testing or for shared ancestry: the plot shows Benjamini–Hochberg q-values and phylogenetic contrasts.

The original site labelled the base columns with their complements, so its skews have the opposite sign. Seemethods.